1VPR

Crystal structure of a luciferase domain from the dinoflagellate Lingulodinium polyedrum

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1vpra1	All beta proteins	Lipocalins	Lipocalins	Dinoflagellate luciferase repeat	Dinoflagellate luciferase	(Lingulodinium polyedra ) [TaxId: 160621 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Dinoflagellate luciferase repeat	8020027	4001964	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Lipocalins	8032407	3001332	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Luciferase_cat	e1vprA1	A: beta barrels	X: Lipocalins/Streptavidin	H: Lipocalins (From Topology)	T: Lipocalins	F: Luciferase_cat	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	4.10.1300.10	Few Secondary Structures	Irregular	Luminescent protein fold	Dinoflagellate luciferase	CATH (4.3.0)
A	4.10.1310.10	Few Secondary Structures	Irregular	Dinoflagellate luciferase repeat	Dinoflagellate luciferase repeat	CATH (4.3.0)
A	2.40.128.20	Mainly Beta	Beta Barrel	Lipocalin	Calycin beta-barrel core domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF10285	Luciferase catalytic domain (Luciferase_cat)	Luciferase catalytic domain	This domain is the catalytic domain of dinoflagellate luciferase . Luciferase is involved in catalysing the light emitting reaction in bioluminescence. The structure of this domain has been solved [1]. The core part of the domain is a 10 stranded bet ...	This domain is the catalytic domain of dinoflagellate luciferase . Luciferase is involved in catalysing the light emitting reaction in bioluminescence. The structure of this domain has been solved [1]. The core part of the domain is a 10 stranded beta barrel that is structurally similar to lipocalins and FABP [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	luciferase	oxidoreductase activity monooxygenase activity oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) oxidoreductase activity, acting on single donors with incorporation of molecular oxygen catalytic activity luciferin monooxygenase activity	bioluminescence cellular metabolic process metabolic process cellular process	membrane-bounded organelle intracellular organelle intracellular anatomical structure cytoplasmic vesicle organelle intracellular vesicle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle vesicle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR018804	Luciferase catalytic domain	Domain
A	IPR044903	Luciferase, helical bundle domain superfamily	Homologous Superfamily
A	IPR044902	Dinoflagellate luciferase repeat	Homologous Superfamily
A	IPR018475	Luciferase, helical bundle domain	Domain
A	IPR012674	Calycin	Homologous Superfamily
A	IPR007959	Dinoflagellate luciferase, N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.