1VPH | pdb_00001vph

CRYSTAL STRUCTURE OF a YbjQ-like protein of unknown function (SSO2532) FROM SULFOLOBUS SOLFATARICUS P2 AT 1.76 A RESOLUTION

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d1vphf1	Alpha and beta proteins (a+b)	YjbQ-like	YjbQ-like	YjbQ-like	Hypothetical protein SSO2532	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
F	d1vphf2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
E	d1vphe1	Alpha and beta proteins (a+b)	YjbQ-like	YjbQ-like	YjbQ-like	Hypothetical protein SSO2532	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
E	d1vphe2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
D	d1vphd1	Alpha and beta proteins (a+b)	YjbQ-like	YjbQ-like	YjbQ-like	Hypothetical protein SSO2532	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
D	d1vphd2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
C	d1vphc1	Alpha and beta proteins (a+b)	YjbQ-like	YjbQ-like	YjbQ-like	Hypothetical protein SSO2532	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
C	d1vphc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
B	d1vphb_	Alpha and beta proteins (a+b)	YjbQ-like	YjbQ-like	YjbQ-like	Hypothetical protein SSO2532	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
A	d1vpha1	Alpha and beta proteins (a+b)	YjbQ-like	YjbQ-like	YjbQ-like	Hypothetical protein SSO2532	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)
A	d1vpha2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Saccharolobus solfataricus P2 ) [TaxId: 273057 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	YjbQ-like	8043201	3001472	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	YjbQ-like	8043201	3001472	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	YjbQ-like	8043201	3001472	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	YjbQ-like	8043201	3001472	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	YjbQ-like	8043201	3001472	SCOP2B (2022-06-29)
A	SCOP2 Family	YjbQ-like	8030822	4002602	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	YjbQ-like	8043201	3001472	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Nup35_RRM	e1vphF1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Nup35_RRM	ECOD (v294.1)
E	Nup35_RRM	e1vphE1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Nup35_RRM	ECOD (v294.1)
D	Nup35_RRM	e1vphD1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Nup35_RRM	ECOD (v294.1)
C	Nup35_RRM	e1vphC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Nup35_RRM	ECOD (v294.1)
B	Nup35_RRM	e1vphB1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Nup35_RRM	ECOD (v294.1)
A	UPF0047	e1vphA1	A: a+b two layers	X: YjbQ-like (Pfam 01894)	H: YjbQ-like (Pfam 01894)	T: YjbQ-like (Pfam 01894)	F: UPF0047	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.60.120.460	Mainly Beta	Sandwich	Jelly Rolls	YjbQ-like	CATH (4.3.0)
E	2.60.120.460	Mainly Beta	Sandwich	Jelly Rolls	YjbQ-like	CATH (4.3.0)
D	2.60.120.460	Mainly Beta	Sandwich	Jelly Rolls	YjbQ-like	CATH (4.3.0)
C	2.60.120.460	Mainly Beta	Sandwich	Jelly Rolls	YjbQ-like	CATH (4.3.0)
B	2.60.120.460	Mainly Beta	Sandwich	Jelly Rolls	YjbQ-like	CATH (4.3.0)
A	2.60.120.460	Mainly Beta	Sandwich	Jelly Rolls	YjbQ-like	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF01894	UPF0047 protein YjbQ-like (YjbQ)	UPF0047 protein YjbQ-like	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR035917	YjbQ-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR001602	UPF0047 protein YjbQ-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.