1VKZ
Crystal structure of Phosphoribosylamine--glycine ligase (TM1250) from Thermotoga maritima at 2.30 A resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
B | SCOP2B Superfamily | Glutathione synthetase ATP-binding domain-like | 8041408 | 3000094 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | PreATP-grasp domain | 8041424 | 3001680 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Rudiment single hybrid motif | 8041422 | 3001910 | SCOP2B (2022-06-29) |
A | SCOP2 Family | BC ATP-binding domain-like | 8029029 | 4002053 | SCOP2 (2022-06-29) |
A | SCOP2 Family | BC C-terminal domain-like | 8029043 | 4002928 | SCOP2 (2022-06-29) |
A | SCOP2 Family | BC N-terminal domain-like | 8029045 | 4003858 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Glutathione synthetase ATP-binding domain-like | 8041408 | 3000094 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Rudiment single hybrid motif | 8041422 | 3001910 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | PreATP-grasp domain | 8041424 | 3001680 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | ATP-grasp | e1vkzB1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: ATP-grasp | ECOD (1.6) |
B | GARS_C | e1vkzB2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: CO dehydrogenase molybdoprotein N-domain-like | F: GARS_C | ECOD (1.6) |
B | GARS_N | e1vkzB3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: PreATP-grasp domain | F: GARS_N | ECOD (1.6) |
A | ATP-grasp | e1vkzA1 | A: a+b complex topology | X: Protein kinase/SAICAR synthase/ATP-grasp (From Homology) | H: Protein kinase/SAICAR synthase/ATP-grasp | T: ATP-grasp | F: ATP-grasp | ECOD (1.6) |
A | GARS_C | e1vkzA2 | A: a+b complex topology | X: alpha/beta-Hammerhead/Barrel-sandwich hybrid | H: alpha/beta-Hammerhead/Barrel-sandwich hybrid | T: CO dehydrogenase molybdoprotein N-domain-like | F: GARS_C | ECOD (1.6) |
A | GARS_N | e1vkzA3 | A: a/b three-layered sandwiches | X: Rossmann-like | H: Rossmann-related | T: PreATP-grasp domain | F: GARS_N | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
B | 3.40.50.20 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
B | 3.30.1490.20 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
B | 3.30.470.20 | Alpha Beta | 2-Layer Sandwich | D-amino Acid Aminotransferase | Chain A, domain 1 | CATH (4.3.0) |
B | 3.90.600.10 | Alpha Beta | Alpha-Beta Complex | Glycinamide Ribonucleotide Synthetase | Chain A, domain 4 | CATH (4.3.0) |
A | 3.40.50.20 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | CATH (4.3.0) | |
A | 3.30.1490.20 | Alpha Beta | 2-Layer Sandwich | Dna Ligase | domain 1 | CATH (4.3.0) |
A | 3.30.470.20 | Alpha Beta | 2-Layer Sandwich | D-amino Acid Aminotransferase | Chain A, domain 1 | CATH (4.3.0) |
A | 3.90.600.10 | Alpha Beta | Alpha-Beta Complex | Glycinamide Ribonucleotide Synthetase | Chain A, domain 4 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF02844 | Phosphoribosylglycinamide synthetase, N domain (GARS_N) | Phosphoribosylglycinamide synthetase, N domain | Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphor ... | Domain | |
PF01071 | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain (GARS_A) | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain | Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phospho ... | Domain | |
PF02843 | Phosphoribosylglycinamide synthetase, C domain (GARS_C) | Phosphoribosylglycinamide synthetase, C domain | Phosphoribosylglycinamide synthetase catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by Phosphoribosylglycinamide synthetase is the ATP- dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphor ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000115 | Phosphoribosylglycinamide synthetase | Family | |
IPR011761 | ATP-grasp fold | Domain | |
IPR013815 | ATP-grasp fold, subdomain 1 | Homologous Superfamily | |
IPR037123 | Phosphoribosylglycinamide synthetase, C-domain superfamily | Homologous Superfamily | |
IPR020559 | Phosphoribosylglycinamide synthetase, conserved site | Conserved Site | |
IPR020562 | Phosphoribosylglycinamide synthetase, N-terminal | Domain | |
IPR016185 | Pre-ATP-grasp domain superfamily | Homologous Superfamily | |
IPR011054 | Rudiment single hybrid motif | Homologous Superfamily | |
IPR020561 | Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain | Domain | |
IPR020560 | Phosphoribosylglycinamide synthetase, C-domain | Domain |