Annotations: 1VJ6

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1vj6a1	All beta proteins	PDZ domain-like	PDZ domain-like	PDZ domain	Phosphatase hPTP1e	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d1vj6a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	PDZ domain-like	8038737	3000388	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PDZ	e1vj6A1	A: beta barrels	X: PDZ domain (From Topology)	H: PDZ domain (From Topology)	T: PDZ domain	F: PDZ	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.30.42.10	Mainly Beta	Roll	Pdz3 Domain	PDZ domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF16599	Unstructured linker region on PTN13 protein between PDZ (PTN13_u3)	Unstructured linker region on PTN13 protein between PDZ	-	Disordered
A	PF00595	PDZ domain (PDZ)	PDZ domain	PDZ domains are found in diverse signaling proteins.	Domain
B	PF05937	EB-1 Binding Domain (EB1_binding)	EB-1 Binding Domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	protein-tyrosine-phosphatase (nonreceptor type 13)	phosphatidylinositol 3-kinase binding protein binding binding phosphatidylinositol 3-kinase regulatory subunit binding phosphoric ester hydrolase activity phosphoprotein phosphatase activity catalytic activity, acting on a protein hydrolase activity, acting on ester bonds protein tyrosine phosphatase activity phosphatase activity hydrolase activity catalytic activity	regulation of cellular process regulation of protein modification process regulation of protein phosphorylation negative regulation of biological process negative regulation of nitrogen compound metabolic process negative regulation of phosphate metabolic process negative regulation of cellular metabolic process regulation of primary metabolic process regulation of nitrogen compound metabolic process organic substance metabolic process regulation of phosphate metabolic process phosphate-containing compound metabolic process negative regulation of protein modification process negative regulation of cellular process regulation of cellular process regulation of protein modification process regulation of protein phosphorylation negative regulation of biological process negative regulation of nitrogen compound metabolic process negative regulation of phosphate metabolic process negative regulation of cellular metabolic process regulation of primary metabolic process regulation of nitrogen compound metabolic process organic substance metabolic process regulation of phosphate metabolic process phosphate-containing compound metabolic process negative regulation of protein modification process negative regulation of cellular process nitrogen compound metabolic process protein metabolic process protein modification process phosphorus metabolic process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process regulation of biological process organonitrogen compound metabolic process protein phosphorylation phosphorylation regulation of protein metabolic process cellular metabolic process negative regulation of metabolic process biological regulation primary metabolic process regulation of cellular metabolic process regulation of macromolecule metabolic process negative regulation of protein phosphorylation macromolecule modification negative regulation of phosphorus metabolic process metabolic process cellular process regulation of phosphorylation regulation of phosphorus metabolic process macromolecule metabolic process negative regulation of phosphorylation regulation of metabolic process cellular response to stimulus regulation of signaling regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction response to stimulus signaling regulation of signal transduction intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus intracellular signaling cassette regulation of cell communication signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction dephosphorylation multicellular organismal process regulation of cellular component organization regulation of developmental process negative regulation of excitatory synapse assembly cellular component organization cellular component biogenesis regulation of nervous system development multicellular organism development cellular component assembly negative regulation of cell junction assembly cell junction assembly regulation of excitatory synapse assembly anatomical structure development regulation of synapse structure or activity negative regulation of nervous system development regulation of multicellular organismal process synapse organization cellular component organization or biogenesis regulation of synapse assembly regulation of biological quality system development developmental process regulation of multicellular organismal development negative regulation of cellular component organization negative regulation of developmental process nervous system development negative regulation of synapse organization regulation of cellular component biogenesis excitatory synapse assembly regulation of cell junction assembly regulation of synapse organization cell junction organization synapse assembly negative regulation of multicellular organismal process negative regulation of synapse assembly	midbody cellular anatomical entity cell projection cell leading edge plasma membrane bounded cell projection lamellipodium intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane membrane-bounded organelle nucleus midbody cellular anatomical entity cell projection cell leading edge plasma membrane bounded cell projection lamellipodium intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen intracellular organelle nucleoplasm organelle lumen organelle nuclear lumen cytoskeleton intracellular non-membrane-bounded organelle non-membrane-bounded organelle nucleolus fibrillar center cell body
B	Adenomatous polyposis coli protein	cytoskeletal protein binding microtubule binding protein binding binding tubulin binding protein-containing complex binding enzyme regulator activity molecular function regulator activity protein kinase regulator activity kinase regulator activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding gamma-catenin binding cytoskeletal protein binding microtubule binding protein binding binding tubulin binding protein-containing complex binding enzyme regulator activity molecular function regulator activity protein kinase regulator activity kinase regulator activity ubiquitin protein ligase binding ubiquitin-like protein ligase binding enzyme binding gamma-catenin binding protease binding kinase binding protein kinase binding beta-catenin binding microtubule plus-end binding dynein complex binding	developmental process multicellular organism development multicellular organismal process anatomical structure development pattern specification process cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling canonical Wnt signaling pathway biological regulation cell communication developmental process multicellular organism development multicellular organismal process anatomical structure development pattern specification process cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling canonical Wnt signaling pathway biological regulation cell communication cellular process signal transduction Wnt signaling pathway regulation of cellular component organization positive regulation of cellular component organization cell projection organization positive regulation of biological process plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization pseudopodium assembly cellular component assembly positive regulation of cell projection organization cellular component organization or biogenesis positive regulation of cellular process plasma membrane bounded cell projection organization positive regulation of cellular component biogenesis regulation of cell projection organization regulation of cell projection assembly regulation of cellular component biogenesis regulation of plasma membrane bounded cell projection assembly positive regulation of pseudopodium assembly regulation of pseudopodium assembly cell projection assembly regulation of plasma membrane bounded cell projection organization positive regulation of plasma membrane bounded cell projection assembly pseudopodium organization negative regulation of cell population proliferation cell population proliferation negative regulation of biological process negative regulation of acinar cell proliferation regulation of acinar cell proliferation acinar cell proliferation regulation of cell population proliferation negative regulation of cellular process regulation of epithelial cell proliferation epithelial cell proliferation negative regulation of epithelial cell proliferation cell division dorsal/ventral pattern formation regionalization apoptotic process cell death programmed cell death organonitrogen compound catabolic process organonitrogen compound metabolic process catabolic process primary metabolic process protein catabolic process macromolecule catabolic process organic substance metabolic process nitrogen compound metabolic process metabolic process protein metabolic process macromolecule metabolic process organic substance catabolic process ameboidal-type cell migration cell migration fibroblast migration cell motility axonogenesis cellular developmental process plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation system development nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron development maintenance of cell number stem cell population maintenance reproductive system development prostate gland development reproductive process gland development animal organ development epithelial cell proliferation involved in prostate gland development urogenital system development developmental process involved in reproduction reproductive structure development odontogenesis animal organ morphogenesis somatic stem cell population maintenance regulation of cell motility epithelium migration tissue migration regulation of locomotion regulation of cell migration regulation of multicellular organismal process epithelial cell migration regulation of epithelial cell migration locomotion establishment of organelle localization cellular localization attachment of spindle microtubules to kinetochore regulation of cell cycle process establishment of localization metaphase chromosome alignment localization chromosome localization organelle localization establishment of localization in cell nuclear chromosome segregation regulation of attachment of spindle microtubules to kinetochore cell cycle establishment of chromosome localization regulation of cell cycle chromosome segregation cell cycle process regulation of osteoblast differentiation regulation of developmental process regulation of cell differentiation osteoblast differentiation ossification endothelial cell proliferation protein-containing complex organization protein-containing complex assembly regulation of nitrogen compound metabolic process regulation of metabolic process negative regulation of signaling regulation of signal transduction negative regulation of cell communication negative regulation of Wnt signaling pathway regulation of signaling regulation of Wnt signaling pathway negative regulation of response to stimulus negative regulation of signal transduction regulation of response to stimulus regulation of cell communication regulation of reproductive process regulation of epithelial cell proliferation involved in prostate gland development negative regulation of developmental process negative regulation of epithelial cell proliferation involved in prostate gland development negative regulation of reproductive process negative regulation of multicellular organismal process skin development negative regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death negative regulation of apoptotic process regulation of cell cycle phase transition spindle checkpoint signaling negative regulation of cell cycle regulation of mitotic nuclear division intracellular signal transduction negative regulation of mitotic cell cycle negative regulation of mitotic sister chromatid segregation negative regulation of chromosome organization negative regulation of cell cycle phase transition mitotic spindle checkpoint signaling mitotic sister chromatid separation negative regulation of sister chromatid segregation mitotic spindle assembly checkpoint signaling negative regulation of cellular component organization sister chromatid segregation regulation of chromosome organization regulation of organelle organization regulation of mitotic cell cycle phase transition regulation of mitotic sister chromatid segregation mitotic cell cycle process regulation of chromosome separation negative regulation of mitotic nuclear division regulation of chromosome segregation regulation of mitotic sister chromatid separation regulation of metaphase/anaphase transition of cell cycle spindle assembly checkpoint signaling cell cycle phase transition regulation of mitotic metaphase/anaphase transition mitotic cell cycle regulation of mitotic cell cycle mitotic sister chromatid segregation negative regulation of mitotic metaphase/anaphase transition negative regulation of chromosome separation mitotic nuclear division negative regulation of mitotic cell cycle phase transition organelle fission chromosome organization negative regulation of cell cycle process cell cycle checkpoint signaling mitotic cell cycle checkpoint signaling organelle organization nuclear division negative regulation of chromosome segregation chromosome separation negative regulation of organelle organization negative regulation of nuclear division regulation of sister chromatid segregation negative regulation of mitotic sister chromatid separation regulation of nuclear division negative regulation of metaphase/anaphase transition of cell cycle metaphase/anaphase transition of mitotic cell cycle metaphase/anaphase transition of cell cycle mitotic cell cycle phase transition epithelium development epidermis development molting cycle process hair cycle tissue development skin epidermis development hair follicle development molting cycle hair cycle process positive regulation of protein metabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of macromolecule metabolic process regulation of protein metabolic process regulation of macromolecule metabolic process regulation of catabolic process positive regulation of protein catabolic process positive regulation of catabolic process positive regulation of nitrogen compound metabolic process regulation of protein catabolic process regulation of catalytic activity negative regulation of nitrogen compound metabolic process negative regulation of catalytic activity regulation of cyclin-dependent protein kinase activity regulation of transferase activity negative regulation of cellular metabolic process negative regulation of kinase activity negative regulation of transferase activity regulation of phosphate metabolic process regulation of cyclin-dependent protein serine/threonine kinase activity phosphate-containing compound metabolic process negative regulation of protein modification process phosphorus metabolic process protein modification process negative regulation of protein metabolic process protein phosphorylation phosphorylation cellular metabolic process negative regulation of metabolic process regulation of cellular metabolic process regulation of molecular function regulation of kinase activity negative regulation of protein phosphorylation macromolecule modification regulation of protein serine/threonine kinase activity regulation of phosphorus metabolic process regulation of protein modification process regulation of protein phosphorylation negative regulation of phosphate metabolic process negative regulation of cyclin-dependent protein serine/threonine kinase activity negative regulation of protein serine/threonine kinase activity negative regulation of macromolecule metabolic process negative regulation of cyclin-dependent protein kinase activity negative regulation of molecular function negative regulation of protein kinase activity regulation of protein kinase activity negative regulation of phosphorus metabolic process regulation of phosphorylation negative regulation of phosphorylation proteolysis involved in protein catabolic process proteasomal protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process proteolysis ubiquitin-dependent protein catabolic process cell adhesion positive regulation of cell adhesion regulation of cell adhesion microtubule cytoskeleton organization microtubule-based process cytoplasmic microtubule organization supramolecular fiber organization cytoskeleton organization negative regulation of intracellular signal transduction regulation of intracellular signal transduction intracellular signaling cassette regulation of MAPK cascade MAPK cascade negative regulation of MAPK cascade myeloid leukocyte differentiation regulation of leukocyte differentiation regulation of cell development regulation of osteoclast differentiation osteoclast differentiation regulation of immune system process regulation of multicellular organismal development hemopoiesis regulation of myeloid cell differentiation regulation of myeloid leukocyte differentiation myeloid cell differentiation immune system process regulation of hemopoiesis leukocyte differentiation cellular response to nitrogen compound response to organic substance response to peptide hormone insulin receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway cellular response to endogenous stimulus response to hormone cellular response to organic substance enzyme-linked receptor protein signaling pathway cellular response to hormone stimulus response to endogenous stimulus response to organonitrogen compound response to oxygen-containing compound cellular response to peptide hormone stimulus response to nitrogen compound cellular response to oxygen-containing compound cellular response to chemical stimulus cellular response to organonitrogen compound response to chemical response to insulin cellular response to insulin stimulus positive regulation of locomotion positive regulation of cell migration positive regulation of cell motility canonical Wnt signaling pathway involved in negative regulation of apoptotic process negative regulation of cell cycle G1/S phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition protein localization protein localization to microtubule cytoskeleton regulation of localization regulation of protein localization regulation of protein localization to centrosome protein localization to microtubule organizing center regulation of cellular localization cellular macromolecule localization macromolecule localization protein localization to cytoskeleton protein localization to organelle positive regulation of protein localization positive regulation of protein localization to centrosome protein localization to centrosome negative regulation of endothelial cell proliferation regulation of endothelial cell proliferation regulation of cytoskeleton organization regulation of microtubule polymerization or depolymerization negative regulation of microtubule depolymerization protein-containing complex disassembly regulation of protein-containing complex disassembly microtubule polymerization or depolymerization regulation of microtubule depolymerization negative regulation of protein-containing complex disassembly negative regulation of supramolecular fiber organization cellular component disassembly negative regulation of microtubule polymerization or depolymerization regulation of protein depolymerization negative regulation of cytoskeleton organization regulation of microtubule-based process negative regulation of protein depolymerization microtubule depolymerization regulation of supramolecular fiber organization protein depolymerization regulation of microtubule cytoskeleton organization proximal/distal pattern formation epithelial cell differentiation regulation of epithelial cell differentiation cellular response to stress DNA damage response response to stress cell fate specification cell fate commitment sensory organ development eye development retina development in camera-type eye visual system development camera-type eye development sensory system development regulation of canonical Wnt signaling pathway negative regulation of canonical Wnt signaling pathway positive regulation of programmed cell death positive regulation of apoptotic process protein polymerization microtubule polymerization regulation of growth regulation of cardiac muscle tissue growth developmental growth cardiac muscle cell proliferation negative regulation of cardiac muscle tissue growth organ growth striated muscle tissue development negative regulation of organ growth negative regulation of growth regulation of organ growth regulation of heart growth regulation of cardiac muscle cell proliferation muscle cell proliferation cardiac muscle tissue growth muscle tissue development striated muscle cell proliferation heart development heart growth regulation of developmental growth negative regulation of heart growth cardiac muscle tissue development growth circulatory system development negative regulation of developmental growth negative regulation of cardiac muscle cell proliferation canonical Wnt signaling pathway involved in positive regulation of apoptotic process positive regulation of developmental process positive regulation of cell differentiation positive regulation of cell division regulation of cell division fibroblast apoptotic process cell activation mononuclear cell differentiation lymphocyte activation lymphocyte differentiation leukocyte activation T cell differentiation in thymus T cell activation T cell differentiation positive regulation of fibroblast apoptotic process regulation of fibroblast apoptotic process establishment or maintenance of cell polarity positive regulation of organelle organization regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly positive regulation of protein polymerization positive regulation of microtubule polymerization or depolymerization positive regulation of cytoskeleton organization positive regulation of supramolecular fiber organization positive regulation of microtubule polymerization regulation of protein polymerization regulation of microtubule polymerization axis specification kidney development renal system development regulation of epithelial cell apoptotic process epithelial cell apoptotic process negative regulation of epithelial cell apoptotic process cellular homeostasis homeostatic process muscle cell cellular homeostasis immune system development hematopoietic or lymphoid organ development thymus development cytoskeleton-dependent cytokinesis mitotic cytokinesis cytokinesis regulation of fibroblast migration positive regulation of fibroblast migration regulation of animal organ morphogenesis regulation of odontogenesis negative regulation of odontogenesis negative regulation of animal organ morphogenesis regulation of anatomical structure morphogenesis adaptive thermogenesis multicellular organismal-level homeostasis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis positive regulation of cold-induced thermogenesis positive regulation of multicellular organismal process negative regulation of G1/S transition of mitotic cell cycle regulation of G1/S transition of mitotic cell cycle G1/S transition of mitotic cell cycle oxoacid metabolic process amino acid metabolic process organic acid metabolic process alpha-amino acid metabolic process glutamine family amino acid metabolic process regulation of glutamate metabolic process cellular ketone metabolic process regulation of small molecule metabolic process glutamate metabolic process small molecule metabolic process regulation of cellular ketone metabolic process regulation of cellular amino acid metabolic process regulation of amine metabolic process dicarboxylic acid metabolic process carboxylic acid metabolic process L-amino acid metabolic process proteinogenic amino acid metabolic process amine metabolic process regulation of glutamine family amino acid metabolic process anterior/posterior pattern specification	membrane-bounded organelle intracellular anatomical structure nuclear membrane membrane nucleus cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope organelle membrane growth cone membrane-bounded organelle intracellular anatomical structure nuclear membrane membrane nucleus cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope organelle membrane growth cone axon cell projection distal axon neuron projection axonal growth cone plasma membrane bounded cell projection site of polarized growth ruffle cell leading edge plasma membrane leading edge membrane cell periphery ruffle membrane plasma membrane region cell projection membrane cell body fiber protein-containing complex catalytic complex beta-catenin destruction complex intracellular protein-containing complex neuron projection terminus chromosome chromosomal region kinetochore intracellular non-membrane-bounded organelle chromosome, centromeric region condensed chromosome, centromeric region supramolecular complex condensed chromosome non-membrane-bounded organelle lateral plasma membrane lamellipodium extrinsic component of plasma membrane catenin complex plasma membrane protein complex membrane protein complex extrinsic component of membrane somatodendritic compartment dendrite dendritic tree Scrib-APC-beta-catenin complex cytoplasm cell-cell junction adherens junction anchoring junction cell junction Golgi apparatus perinuclear region of cytoplasm cell body neuronal cell body synapse intracellular vesicle transport vesicle membrane presynapse bounding membrane of organelle cytoplasmic vesicle vesicle membrane synaptic vesicle synaptic vesicle membrane vesicle transport vesicle exocytic vesicle membrane cytoplasmic vesicle membrane secretory vesicle exocytic vesicle polymeric cytoskeletal fiber cytoskeleton supramolecular fiber microtubule supramolecular polymer microtubule cytoskeleton cell cortex centrosome microtubule organizing center apical junction complex bicellular tight junction tight junction

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR000299	FERM domain	Domain
A	IPR014352	FERM/acyl-CoA-binding protein superfamily	Homologous Superfamily
A	IPR012153	Tyrosine-protein phosphatase non-receptor type 13	Family
A	IPR003595	Protein-tyrosine phosphatase, catalytic	Domain
A	IPR019748	FERM central domain	Domain
A	IPR018980	FERM, C-terminal PH-like domain	Domain
A	IPR011993	PH-like domain superfamily	Homologous Superfamily
A	IPR019749	Band 4.1 domain	Domain
A	IPR029021	Protein-tyrosine phosphatase-like	Homologous Superfamily
A	IPR035963	FERM superfamily, second domain	Homologous Superfamily
A	IPR000242	Tyrosine-specific protein phosphatase, PTPase domain	Domain
A	IPR036034	PDZ superfamily	Homologous Superfamily
A	IPR000387	Tyrosine-specific protein phosphatases domain	Domain
A	IPR018979	FERM, N-terminal	Domain
A	IPR001478	PDZ domain	Domain
A	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
A	IPR011019	KIND domain	Domain
B	IPR016024	Armadillo-type fold	Homologous Superfamily
B	IPR000225	Armadillo	Repeat
B	IPR009223	Adenomatous polyposis coli protein repeat	Repeat
B	IPR026818	Adenomatous polyposis coli (APC) family	Family
B	IPR041257	Adenomatous polyposis coli (APC) repeat	Repeat
B	IPR026831	Adenomatous polyposis coli protein	Homologous Superfamily
B	IPR009234	Adenomatous polyposis coli protein basic domain	Domain
B	IPR009240	Adenomatous polyposis coli protein, 15 residue repeat	Repeat
B	IPR009232	EB-1 binding	Domain
B	IPR036149	APC, N-terminal coiled-coil domain superfamily	Homologous Superfamily
B	IPR009224	SAMP	Repeat
B	IPR011989	Armadillo-like helical	Homologous Superfamily
B	IPR032038	Adenomatous polyposis coli, N-terminal dimerisation domain	Domain