1VEH | pdb_00001veh

Solution structure of RSGI RUH-018, a NifU-like domain of hirip5 protein from mouse cDNA

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1veha1	Alpha and beta proteins (a+b)	Alpha-lytic protease prodomain-like	Fe-S cluster assembly (FSCA) domain-like	NifU C-terminal domain-like	HIRA-interacting protein 5, HIRIP5	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d1veha3	Artifacts	Tags	Tags	Tags	C-terminal Tags	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)
A	d1veha2	Artifacts	Tags	Tags	Tags	N-terminal Tags	house mouse (Mus musculus ) [TaxId: 10090 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	NifU C-terminal domain-like	8030695	4003737	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Fe-S cluster assembly (FSCA) domain-like	8043074	3001389	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	NifU	e1vehA1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: Fe-S cluster assembly (FSCA) domain-like (From Topology)	T: Fe-S cluster assembly (FSCA) domain-like	F: NifU	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.300.130	Alpha Beta	2-Layer Sandwich	GMP Synthetase	Chain A, domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01106	NifU-like domain (NifU)	NifU-like domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	NifU-like protein HIRIP5	iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding	cellular component biogenesis cellular component organization metallo-sulfur cluster assembly cellular component assembly iron-sulfur cluster assembly cellular process cellular component organization or biogenesis	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR034904	Fe-S cluster assembly domain superfamily	Homologous Superfamily
A	IPR036498	Scaffold protein Nfu/NifU, N-terminal domain superfamily	Homologous Superfamily
A	IPR001075	NIF system FeS cluster assembly, NifU, C-terminal	Domain
A	IPR014824	Scaffold protein Nfu/NifU, N-terminal	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.