1VDX | pdb_00001vdx

Crystal Structure of a Pyrococcus horikoshii protein with similarities to 2'5' RNA-ligase

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ad1vdxa_ Alpha and beta proteins (a+b) LigT-like LigT-like automated matches automated matches (Pyrococcus horikoshii ) [TaxId: 53953 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 Family2'-5' RNA ligase LigT 8086039 4000652 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyLigT-like 8086040 3001408 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AADPrib_exo_Toxe1vdxA1 A: a/b three-layered sandwichesX: Globin-likeH: Ring-building motif I in type III secretion systemT: Ring-building motif I in type III secretion systemF: ADPrib_exo_ToxECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A3.90.1140.10 Alpha Beta Alpha-Beta Complex Cyclic Phosphodiesterase Chain: A,CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Hypothetical protein PH0099 - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR014051Phosphoesterase, HXTXDomain
IPR009097Cyclic phosphodiesteraseHomologous Superfamily
IPR004175RNA 2',3'-cyclic phosphodiesteraseFamily