1VDD
Crystal structure of recombinational repair protein RecR
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1vdda_ | Multi-domain proteins (alpha and beta) | Recombination protein RecR | Recombination protein RecR | Recombination protein RecR | Recombination protein RecR | (Deinococcus radiodurans ) [TaxId: 1299 ], | SCOPe (2.08) |
B | d1vddb_ | Multi-domain proteins (alpha and beta) | Recombination protein RecR | Recombination protein RecR | Recombination protein RecR | Recombination protein RecR | (Deinococcus radiodurans ) [TaxId: 1299 ], | SCOPe (2.08) |
C | d1vddc_ | Multi-domain proteins (alpha and beta) | Recombination protein RecR | Recombination protein RecR | Recombination protein RecR | Recombination protein RecR | (Deinococcus radiodurans ) [TaxId: 1299 ], | SCOPe (2.08) |
D | d1vddd_ | Multi-domain proteins (alpha and beta) | Recombination protein RecR | Recombination protein RecR | Recombination protein RecR | Recombination protein RecR | (Deinococcus radiodurans ) [TaxId: 1299 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | RecR zinc finger-like | 8028905 | 4002927 | SCOP2 (2022-06-29) |
A | SCOP2 Family | RecR N-terminal domain-like | 8055730 | 4007649 | SCOP2 (2022-06-29) |
A | SCOP2 Family | RecR C-terminal domain-like | 8055732 | 4007650 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8041284 | 3000068 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | RecR N-terminal domain-like | 8055731 | 3001909 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Toprim domain-like | 8055733 | 3000737 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8041284 | 3000068 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecR N-terminal domain-like | 8055731 | 3001909 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Toprim domain-like | 8055733 | 3000737 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | RecR N-terminal domain-like | 8055731 | 3001909 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Toprim domain-like | 8055733 | 3000737 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8041284 | 3000068 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | RecR N-terminal domain-like | 8055731 | 3001909 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8041284 | 3000068 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Toprim domain-like | 8055733 | 3000737 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | HHH_10 | e1vddA1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_10 | ECOD (1.6) |
A | Toprim_4 | e1vddA3 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: Toprim_4 | ECOD (1.6) |
A | UNK_F_TYPE | e1vddA2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: UNK_F_TYPE | ECOD (1.6) |
B | HHH_10 | e1vddB1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_10 | ECOD (1.6) |
B | Toprim_4 | e1vddB3 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: Toprim_4 | ECOD (1.6) |
B | UNK_F_TYPE | e1vddB2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: UNK_F_TYPE | ECOD (1.6) |
C | HHH_10 | e1vddC1 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_10 | ECOD (1.6) |
C | Toprim_4 | e1vddC6 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: Toprim_4 | ECOD (1.6) |
C | UNK_F_TYPE | e1vddC2 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: UNK_F_TYPE | ECOD (1.6) |
D | HHH_10 | e1vddD5 | A: alpha arrays | X: HhH/H2TH | H: SAM/DNA-glycosylase | T: SAM domain-like | F: HHH_10 | ECOD (1.6) |
D | Toprim_4 | e1vddD6 | A: a/b three-layered sandwiches | X: HAD domain-like | H: HAD domain-related | T: Toprim domain | F: Toprim_4 | ECOD (1.6) |
D | UNK_F_TYPE | e1vddD4 | A: few secondary structure elements | X: RING/U-box-like | H: RING/U-box-like | T: RING/U-box | F: UNK_F_TYPE | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF21176 | RecR, helix-hairpin-helix (RecR_HhH) | RecR, helix-hairpin-helix | - | Motif | |
PF21175 | RecR, C-terminal (RecR_C) | RecR, C-terminal | The bacterial protein RecR is an important regulator in the RecFOR homologous recombination pathway during DNA repair. It acts with RecF and RecO forming a complex that facilitates the loading of RecA onto ssDNA. RecR is a zinc metalloprotein consist ... | Domain | |
PF02132 | RecR, Cys4-zinc finger motif (RecR_ZnF) | RecR, Cys4-zinc finger motif | - | Motif | |
PF01751 | Toprim domain (Toprim) | Toprim domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR023627 | Recombination protein RecR | Homologous Superfamily | |
IPR006171 | TOPRIM domain | Domain | |
IPR015967 | Recombination protein RecR, conserved site | Conserved Site | |
IPR000093 | DNA recombination protein RecR | Family | |
IPR003583 | Helix-hairpin-helix DNA-binding motif, class 1 | Domain | |
IPR034137 | RecR, TOPRIM domain | Domain |