1VBO | pdb_00001vbo

Crystal structure of artocarpin-mannotriose complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1vboa_	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	Artocarpin	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
B	d1vbob_	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	Artocarpin	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
C	d1vboc_	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	Artocarpin	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
D	d1vbod_	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	Artocarpin	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
E	d1vboe_	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	Artocarpin	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
F	d1vbof_	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	Artocarpin	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
G	d1vbog_	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	Artocarpin	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)
H	d1vboh_	All beta proteins	beta-Prism I	Mannose-binding lectins	Mannose-binding lectins	Artocarpin	(Artocarpus integer ) [TaxId: 3490 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Mannose-binding lectins	8028874	4002758	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Mannose-binding lectins	8041253	3001715	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Jacalin	e1vboA1	A: beta duplicates or obligate multimers	X: beta-Prism I (From Topology)	H: beta-Prism I (From Topology)	T: beta-Prism I	F: Jacalin	ECOD (1.6)
B	Jacalin	e1vboB1	A: beta duplicates or obligate multimers	X: beta-Prism I (From Topology)	H: beta-Prism I (From Topology)	T: beta-Prism I	F: Jacalin	ECOD (1.6)
C	Jacalin	e1vboC1	A: beta duplicates or obligate multimers	X: beta-Prism I (From Topology)	H: beta-Prism I (From Topology)	T: beta-Prism I	F: Jacalin	ECOD (1.6)
D	Jacalin	e1vboD1	A: beta duplicates or obligate multimers	X: beta-Prism I (From Topology)	H: beta-Prism I (From Topology)	T: beta-Prism I	F: Jacalin	ECOD (1.6)
E	Jacalin	e1vboE1	A: beta duplicates or obligate multimers	X: beta-Prism I (From Topology)	H: beta-Prism I (From Topology)	T: beta-Prism I	F: Jacalin	ECOD (1.6)
F	Jacalin	e1vboF1	A: beta duplicates or obligate multimers	X: beta-Prism I (From Topology)	H: beta-Prism I (From Topology)	T: beta-Prism I	F: Jacalin	ECOD (1.6)
G	Jacalin	e1vboG1	A: beta duplicates or obligate multimers	X: beta-Prism I (From Topology)	H: beta-Prism I (From Topology)	T: beta-Prism I	F: Jacalin	ECOD (1.6)
H	Jacalin	e1vboH1	A: beta duplicates or obligate multimers	X: beta-Prism I (From Topology)	H: beta-Prism I (From Topology)	T: beta-Prism I	F: Jacalin	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
B	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
C	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
D	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
E	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
F	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
G	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)
H	2.100.10.30	Mainly Beta	Aligned Prism	Vitelline Membrane Outer Layer Protein I, subunit A	Jacalin-like lectin domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF01419	Jacalin-like lectin domain (Jacalin)	Jacalin-like lectin domain	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	artocarpin	binding D-mannose binding monosaccharide binding carbohydrate binding small molecule binding D-glucose binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036404	Jacalin-like lectin domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR033734	Jacalin-like lectin domain, plant	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001229	Jacalin-like lectin domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.