1V4L | pdb_00001v4l

Crystal structure of a platelet agglutination factor isolated from the venom of Taiwan habu (Trimeresurus mucrosquamatus)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
E	d1v4le_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	Snake coagglutinin alpha chain	(Protobothrops mucrosquamatus ) [TaxId: 103944 ],	SCOPe (2.08)
C	d1v4lc_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	Snake coagglutinin alpha chain	(Protobothrops mucrosquamatus ) [TaxId: 103944 ],	SCOPe (2.08)
A	d1v4la_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	Snake coagglutinin alpha chain	(Protobothrops mucrosquamatus ) [TaxId: 103944 ],	SCOPe (2.08)
F	d1v4lf_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	Snake coagglutinin beta chain	(Protobothrops mucrosquamatus ) [TaxId: 103944 ],	SCOPe (2.08)
D	d1v4ld_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	Snake coagglutinin beta chain	(Protobothrops mucrosquamatus ) [TaxId: 103944 ],	SCOPe (2.08)
B	d1v4lb_	Alpha and beta proteins (a+b)	C-type lectin-like	C-type lectin-like	C-type lectin domain	Snake coagglutinin beta chain	(Protobothrops mucrosquamatus ) [TaxId: 103944 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
E	SCOP2B Superfamily	C-type lectin-like	8035406	3001261	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	C-type lectin-like	8035406	3001261	SCOP2B (2022-06-29)
A	SCOP2 Family	C-type lectin domain	8023026	4002453	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	C-type lectin-like	8035406	3001261	SCOP2 (2022-06-29)
F	SCOP2B Superfamily	C-type lectin-like	8035407	3001261	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	C-type lectin-like	8035407	3001261	SCOP2B (2022-06-29)
B	SCOP2 Family	C-type lectin domain	8023027	4002453	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	C-type lectin-like	8035407	3001261	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	Lectin_C	e1v4lE1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C	ECOD (1.6)
C	Lectin_C	e1v4lC1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C	ECOD (1.6)
A	Lectin_C	e1v4lA1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C	ECOD (1.6)
F	Lectin_C	e1v4lF1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C	ECOD (1.6)
D	Lectin_C	e1v4lD1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C	ECOD (1.6)
B	Lectin_C	e1v4lB1	A: a+b complex topology	X: C-type lectin-like (From Homology)	H: C-type lectin-like	T: C-type lectin-like	F: Lectin_C	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
E	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.2.0)
C	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.2.0)
A	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.2.0)
F	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.2.0)
D	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.2.0)
B	3.10.100.10	Alpha Beta	Roll	Mannose-Binding Protein A	Chain A	CATH (4.2.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, C, E	mucrocetin alpha chain	toxin activity	-	cellular anatomical structure extracellular region
B, D, F	mucrocetin beta chain	toxin activity	-	cellular anatomical structure extracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, C, E	IPR001304	C-type lectin-like	Domain
A, C, E	IPR018378	C-type lectin, conserved site	Conserved Site
A, C, E	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
A, C, E	IPR050111	C-type lectin and snaclec domain-containing protein	Family
A, C, E	IPR016187	C-type lectin fold	Homologous Superfamily
B, D, F	IPR001304	C-type lectin-like	Domain
B, D, F	IPR018378	C-type lectin, conserved site	Conserved Site
B, D, F	IPR016186	C-type lectin-like/link domain superfamily	Homologous Superfamily
B, D, F	IPR050111	C-type lectin and snaclec domain-containing protein	Family
B, D, F	IPR016187	C-type lectin fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.