1UTD | pdb_00001utd

The structure of the trp RNA-binding attenuation protein (TRAP) bound to a 63-nucleotide RNA molecule containing GAGUUU repeats

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
Z [auth P]	d1utdp_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
Y [auth O]	d1utdo_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
X [auth N]	d1utdn_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
W [auth M]	d1utdm_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
V [auth L]	d1utdl_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
U [auth K]	d1utdk_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
T [auth J]	d1utdj_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
S [auth I]	d1utdi_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
R [auth H]	d1utdh_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
Q [auth G]	d1utdg_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
P [auth F]	d1utdf_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
O [auth E]	d1utde_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
N [auth D]	d1utdd_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
M [auth C]	d1utdc_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
L [auth B]	d1utdb_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
K [auth A]	d1utda_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
FA [auth V]	d1utdv_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
EA [auth U]	d1utdu_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
DA [auth T]	d1utdt_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
CA [auth S]	d1utds_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
BA [auth R]	d1utdr_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)
AA [auth Q]	d1utdq_	All beta proteins	Double-stranded beta-helix	TRAP-like	Trp RNA-binding attenuation protein (TRAP)	Trp RNA-binding attenuation protein (TRAP)	(Geobacillus stearothermophilus ) [TaxId: 1422 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
Z [auth P]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
Y [auth O]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
X [auth N]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
W [auth M]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
V [auth L]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
U [auth K]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
T [auth J]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
S [auth I]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
R [auth H]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
Q [auth G]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
P [auth F]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
O [auth E]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
N [auth D]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
M [auth C]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
L [auth B]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
K [auth A]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
FA [auth V]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
EA [auth U]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
DA [auth T]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
CA [auth S]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
BA [auth R]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)
AA [auth Q]	SCOP2B Superfamily	TRAP-like	8038933	3001865	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth P]	Copper-bind	e1utdP1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
Y [auth O]	Copper-bind	e1utdO1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
X [auth N]	Copper-bind	e1utdN1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
W [auth M]	Copper-bind	e1utdM1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
V [auth L]	Copper-bind	e1utdL1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
U [auth K]	Copper-bind	e1utdK1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
T [auth J]	Copper-bind	e1utdJ1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
S [auth I]	Copper-bind	e1utdI1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
R [auth H]	Copper-bind	e1utdH1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
Q [auth G]	Copper-bind	e1utdG1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
P [auth F]	Copper-bind	e1utdF1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
O [auth E]	Copper-bind	e1utdE1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
N [auth D]	Copper-bind	e1utdD1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
M [auth C]	Copper-bind	e1utdC1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
L [auth B]	Copper-bind	e1utdB1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
K [auth A]	Copper-bind	e1utdA1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
FA [auth V]	Copper-bind	e1utdV1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
EA [auth U]	Copper-bind	e1utdU1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
DA [auth T]	Copper-bind	e1utdT1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
CA [auth S]	Copper-bind	e1utdS1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
BA [auth R]	Copper-bind	e1utdR1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)
AA [auth Q]	Copper-bind	e1utdQ1	A: alpha bundles	X: Cloacin translocation domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
Z [auth P]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
Y [auth O]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
X [auth N]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
W [auth M]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
V [auth L]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
U [auth K]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
T [auth J]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
S [auth I]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
R [auth H]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
Q [auth G]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
P [auth F]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
O [auth E]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
N [auth D]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
M [auth C]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
L [auth B]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
K [auth A]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
FA [auth V]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
EA [auth U]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
DA [auth T]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
CA [auth S]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
BA [auth R]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)
AA [auth Q]	2.60.40.50	Mainly Beta	Sandwich	Immunoglobulin-like	TRAP-like	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 0], B [auth 1], C [auth 2], D [auth 3], E [auth 4], A [auth 0], B [auth 1], C [auth 2], D [auth 3], E [auth 4], F [auth 5], G [auth 6], GA [auth Z], H [auth 7], I [auth 8], J [auth 9]	5'-R(GPUPUPUPGPAP)-3'	-	-	-
AA [auth Q], BA [auth R], CA [auth S], DA [auth T], EA [auth U], AA [auth Q], BA [auth R], CA [auth S], DA [auth T], EA [auth U], FA [auth V], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F], Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], V [auth L], W [auth M], X [auth N], Y [auth O], Z [auth P]	TRANSCRIPTION ATTENUATION PROTEIN MTRB	RNA binding binding nucleic acid binding identical protein binding protein binding	RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression DNA-templated transcription termination macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA metabolic process primary metabolic process nucleobase-containing compound biosynthetic process gene expression DNA-templated transcription termination macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of cellular process regulation of primary metabolic process regulation of RNA metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation regulation of macromolecule metabolic process regulation of gene expression regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth Q], BA [auth R], CA [auth S], DA [auth T], EA [auth U], AA [auth Q], BA [auth R], CA [auth S], DA [auth T], EA [auth U], FA [auth V], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F], Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], V [auth L], W [auth M], X [auth N], Y [auth O], Z [auth P]	IPR016031	Tryptophan RNA-binding attenuator protein-like domain superfamily	Homologous Superfamily
AA [auth Q], BA [auth R], CA [auth S], DA [auth T], EA [auth U], AA [auth Q], BA [auth R], CA [auth S], DA [auth T], EA [auth U], FA [auth V], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F], Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], V [auth L], W [auth M], X [auth N], Y [auth O], Z [auth P]	IPR000824	Transcription attenuation protein MtrB	Family
AA [auth Q], BA [auth R], CA [auth S], DA [auth T], EA [auth U], AA [auth Q], BA [auth R], CA [auth S], DA [auth T], EA [auth U], FA [auth V], K [auth A], L [auth B], M [auth C], N [auth D], O [auth E], P [auth F], Q [auth G], R [auth H], S [auth I], T [auth J], U [auth K], V [auth L], W [auth M], X [auth N], Y [auth O], Z [auth P]	IPR023558	Tryptophan RNA-binding attenuator protein domain	Domain