1UFW | pdb_00001ufw

Solution structure of RNP domain in Synaptojanin 2

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1ufwa1	Alpha and beta proteins (a+b)	Ferredoxin-like	RNA-binding domain, RBD, aka RNA recognition motif (RRM)	Canonical RBD	Synaptojanin 2	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1ufwa3	Artifacts	Tags	Tags	Tags	C-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1ufwa2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Canonical RBD	8029403	4000236	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	RNA-binding domain, RBD	8041782	3000110	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	DUF1866	e1ufwA1	A: a+b two layers	X: Alpha-beta plaits	H: RNA-binding domain, RBD (From Topology)	T: RNA-binding domain, RBD	F: DUF1866	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.70.330	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits	RRM (RNA recognition motif) domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF08952	Domain of unknown function (DUF1866) (DUF1866)	Domain of unknown function (DUF1866)	This domain, found in Synaptojanin, has no known function.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Synaptojanin 2	phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity phosphatidylinositol phosphate phosphatase activity catalytic activity phosphatidylinositol phosphate 4-phosphatase activity phosphatidylinositol-3-phosphate phosphatase activity phosphatidylinositol monophosphate phosphatase activity RNA binding binding nucleic acid binding inositol trisphosphate phosphatase activity inositol-polyphosphate 5-phosphatase activity phosphoric ester hydrolase activity hydrolase activity, acting on ester bonds phosphatase activity hydrolase activity phosphatidylinositol phosphate phosphatase activity catalytic activity phosphatidylinositol phosphate 4-phosphatase activity phosphatidylinositol-3-phosphate phosphatase activity phosphatidylinositol monophosphate phosphatase activity RNA binding binding nucleic acid binding inositol trisphosphate phosphatase activity inositol-polyphosphate 5-phosphatase activity inositol phosphate phosphatase activity inositol-1,4,5-trisphosphate 5-phosphatase activity phosphatidylinositol bisphosphate phosphatase activity phosphatidylinositol-3,5-bisphosphate 5-phosphatase activity phosphatidylinositol-3,5-bisphosphate phosphatase activity phosphatidylinositol phosphate 5-phosphatase activity phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity phosphatidylinositol-4,5-bisphosphate phosphatase activity phosphatidylinositol-3,5-bisphosphate 3-phosphatase activity	synaptic vesicle endocytosis import into cell cellular localization transport synaptic vesicle cycle establishment of localization vesicle-mediated transport presynaptic endocytosis vesicle-mediated transport in synapse synaptic vesicle recycling localization establishment of localization in cell cellular process endocytosis synaptic vesicle endocytosis import into cell cellular localization transport synaptic vesicle cycle establishment of localization vesicle-mediated transport presynaptic endocytosis vesicle-mediated transport in synapse synaptic vesicle recycling localization establishment of localization in cell cellular process endocytosis phosphatidylinositol metabolic process dephosphorylation glycerophospholipid metabolic process lipid modification primary metabolic process phospholipid metabolic process organophosphate metabolic process phosphatidylinositol dephosphorylation phospholipid dephosphorylation phosphate-containing compound metabolic process metabolic process glycerolipid metabolic process phosphorus metabolic process lipid metabolic process glycerophospholipid biosynthetic process lipid biosynthetic process phospholipid biosynthetic process phosphatidylinositol biosynthetic process biosynthetic process glycerolipid biosynthetic process organophosphate biosynthetic process membrane organization cellular component organization cellular component organization or biogenesis	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane microdomain membrane raft presynapse synapse cell junction intracellular organelle cytoskeleton cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane microdomain membrane raft presynapse synapse cell junction intracellular organelle cytoskeleton organelle membraneless organelle intracellular membraneless organelle perinuclear region of cytoplasm cell projection

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR034973	Synaptojanin-2, RNA recognition motif	Domain
A	IPR002013	SAC domain	Domain
A	IPR000504	RNA recognition motif domain	Domain
A	IPR000300	Inositol polyphosphate-related phosphatase	Domain
A	IPR046985	Inositol 5-phosphatase	Family
A	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	Homologous Superfamily
A	IPR036691	Endonuclease/exonuclease/phosphatase superfamily	Homologous Superfamily
A	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
A	IPR015047	Synaptojanin-1/2, RNA recognition motif	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: O15056	breast carcinoma breast cancer ovarian cancer primitive neuroectodermal tumor tuberculosis astrocytic tumor glioblastoma lung cancer malignant glioma Mammary Neoplasms, Human oligodendroglioma Pick disease psoriasis X-linked mixed deafness with perilymphatic gusher atypical teratoid rhabdoid tumor breast carcinoma breast cancer ovarian cancer primitive neuroectodermal tumor tuberculosis astrocytic tumor glioblastoma lung cancer malignant glioma Mammary Neoplasms, Human oligodendroglioma Pick disease psoriasis X-linked mixed deafness with perilymphatic gusher atypical teratoid rhabdoid tumor large cell medulloblastoma lung carcinoma medulloblastoma osteosarcoma pituitary cancer subependymal giant cell astrocytoma gastric carcinoma lung adenocarcinoma malignant ependymoma non-small cell lung carcinoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.