1UFI | pdb_00001ufi

Crystal structure of the dimerization domain of human CENP-B

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1ufia1	All alpha proteins	ROP-like	Dimerisation domain of CENP-B	Dimerisation domain of CENP-B	Dimerisation domain of CENP-B	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1ufia2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d1ufid1	All alpha proteins	ROP-like	Dimerisation domain of CENP-B	Dimerisation domain of CENP-B	Dimerisation domain of CENP-B	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d1ufid2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d1ufic1	All alpha proteins	ROP-like	Dimerisation domain of CENP-B	Dimerisation domain of CENP-B	Dimerisation domain of CENP-B	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d1ufic2	Artifacts	Tags	Tags	Tags	N-terminal Tags	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1ufib_	All alpha proteins	ROP-like	Dimerisation domain of CENP-B	Dimerisation domain of CENP-B	Dimerisation domain of CENP-B	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Dimerisation domain of CENP-B	8041777	3000881	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Dimerisation domain of CENP-B	8041777	3000881	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Dimerisation domain of CENP-B	8041777	3000881	SCOP2B (2022-06-29)
B	SCOP2 Family	Dimerisation domain of CENP-B	8029398	4000650	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Dimerisation domain of CENP-B	8041777	3000881	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	CENP-B_dimeris	e1ufiA1	A: alpha duplicates or obligate multimers	X: ROP-like	H: Dimerisation domain of CENP-B (From Topology)	T: Dimerisation domain of CENP-B	F: CENP-B_dimeris	ECOD (1.6)
D	CENP-B_dimeris	e1ufiD1	A: alpha duplicates or obligate multimers	X: ROP-like	H: Dimerisation domain of CENP-B (From Topology)	T: Dimerisation domain of CENP-B	F: CENP-B_dimeris	ECOD (1.6)
C	CENP-B_dimeris	e1ufiC1	A: alpha duplicates or obligate multimers	X: ROP-like	H: Dimerisation domain of CENP-B (From Topology)	T: Dimerisation domain of CENP-B	F: CENP-B_dimeris	ECOD (1.6)
B	CENP-B_dimeris	e1ufiB1	A: alpha duplicates or obligate multimers	X: ROP-like	H: Dimerisation domain of CENP-B (From Topology)	T: Dimerisation domain of CENP-B	F: CENP-B_dimeris	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.287.1090	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Dimerisation domain of CENP-B	CATH (4.3.0)
D	1.10.287.1090	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Dimerisation domain of CENP-B	CATH (4.3.0)
C	1.10.287.1090	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Dimerisation domain of CENP-B	CATH (4.3.0)
B	1.10.287.1090	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Dimerisation domain of CENP-B	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF09026	Centromere protein B dimerisation domain (CENP-B_dimeris)	Centromere protein B dimerisation domain	The centromere protein B (CENP-B) dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antipara ...	The centromere protein B (CENP-B) dimerisation domain is composed of two alpha-helices, which are folded into an antiparallel configuration. Dimerisation of CENP-B is mediated by this domain, in which monomers dimerise to form a symmetrical, antiparallel, four-helix bundle structure with a large hydrophobic patch in which 23 residues of one monomer form van der Waals contacts with the other monomer. This CENP-B dimer configuration may be suitable for capturing two distant CENP-B boxes during centromeric heterochromatin formation [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Major centromere autoantigen B	DNA binding binding nucleic acid binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding satellite DNA binding centromeric DNA binding chromatin binding	-	intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome chromosome, centromeric region chromosomal region condensed chromosome, centromeric region condensed chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle chromosome chromosome, centromeric region chromosomal region condensed chromosome, centromeric region condensed chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear body nucleoplasm organelle lumen nuclear lumen pericentric heterochromatin chromatin heterochromatin

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR009057	Homedomain-like superfamily	Homologous Superfamily
A, B, C, D	IPR015115	Centromere protein CENP-B, C-terminal domain	Domain
A, B, C, D	IPR004875	DDE superfamily endonuclease domain	Domain
A, B, C, D	IPR034882	CENP-B, dimerisation domain superfamily	Homologous Superfamily
A, B, C, D	IPR006600	HTH CenpB-type DNA-binding domain	Domain
A, B, C, D	IPR007889	DNA binding HTH domain, Psq-type	Domain
A, B, C, D	IPR050863	Centromere and Transposable Element-Derived Protein	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	Pharos: P07199	atypical teratoid rhabdoid tumor malignant glioma glioblastoma malignant mesothelioma large cell medulloblastoma osteosarcoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.