1U6J | pdb_00001u6j

The Structure of native coenzyme F420-dependent methylenetetrahydromethanopterin dehydrogenase at 2.4A resolution

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Ld1u6jl_ Alpha and beta proteins (a/b) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) (Methanopyrus kandleri ) [TaxId: 2320 ], SCOPe (2.08)
Kd1u6jk_ Alpha and beta proteins (a/b) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) (Methanopyrus kandleri ) [TaxId: 2320 ], SCOPe (2.08)
Jd1u6jj_ Alpha and beta proteins (a/b) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) (Methanopyrus kandleri ) [TaxId: 2320 ], SCOPe (2.08)
Id1u6ji_ Alpha and beta proteins (a/b) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) (Methanopyrus kandleri ) [TaxId: 2320 ], SCOPe (2.08)
Hd1u6jh_ Alpha and beta proteins (a/b) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) (Methanopyrus kandleri ) [TaxId: 2320 ], SCOPe (2.08)
Gd1u6jg_ Alpha and beta proteins (a/b) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) (Methanopyrus kandleri ) [TaxId: 2320 ], SCOPe (2.08)
Fd1u6jf_ Alpha and beta proteins (a/b) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) (Methanopyrus kandleri ) [TaxId: 2320 ], SCOPe (2.08)
Ed1u6je_ Alpha and beta proteins (a/b) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) (Methanopyrus kandleri ) [TaxId: 2320 ], SCOPe (2.08)
Dd1u6jd_ Alpha and beta proteins (a/b) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) (Methanopyrus kandleri ) [TaxId: 2320 ], SCOPe (2.08)
Cd1u6jc_ Alpha and beta proteins (a/b) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) (Methanopyrus kandleri ) [TaxId: 2320 ], SCOPe (2.08)
Bd1u6jb_ Alpha and beta proteins (a/b) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) (Methanopyrus kandleri ) [TaxId: 2320 ], SCOPe (2.08)
Ad1u6ja_ Alpha and beta proteins (a/b) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) (Methanopyrus kandleri ) [TaxId: 2320 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
LSCOP2B SuperfamilyF420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 8032854 3000556 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyF420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 8032854 3000556 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyF420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 8032854 3000556 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyF420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 8032854 3000556 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyF420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 8032854 3000556 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyF420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 8032854 3000556 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyF420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 8032854 3000556 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyF420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 8032854 3000556 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyF420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 8032854 3000556 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyF420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 8032854 3000556 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyF420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 8032854 3000556 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyF420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD) 8032854 3000556 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
LMTDe1u6jL1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)F: MTDECOD (1.6)
KMTDe1u6jK1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)F: MTDECOD (1.6)
JMTDe1u6jJ1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)F: MTDECOD (1.6)
IMTDe1u6jI1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)F: MTDECOD (1.6)
HMTDe1u6jH1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)F: MTDECOD (1.6)
GMTDe1u6jG1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)F: MTDECOD (1.6)
FMTDe1u6jF1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)F: MTDECOD (1.6)
EMTDe1u6jE1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)F: MTDECOD (1.6)
DMTDe1u6jD1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)F: MTDECOD (1.6)
CMTDe1u6jC1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)F: MTDECOD (1.6)
BMTDe1u6jB1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)F: MTDECOD (1.6)
AMTDe1u6jA1 A: a/b three-layered sandwichesX: Flavodoxin-likeH: Class I glutamine amidotransferase-likeT: F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)F: MTDECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
L3.40.50.10830 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)CATH (4.3.0)
L6.10.140.120 Special Helix non-globular Helix Hairpins CATH (4.3.0)
K3.40.50.10830 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)CATH (4.3.0)
K6.10.140.120 Special Helix non-globular Helix Hairpins CATH (4.3.0)
J3.40.50.10830 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)CATH (4.3.0)
J6.10.140.120 Special Helix non-globular Helix Hairpins CATH (4.3.0)
I3.40.50.10830 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)CATH (4.3.0)
I6.10.140.120 Special Helix non-globular Helix Hairpins CATH (4.3.0)
H3.40.50.10830 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)CATH (4.3.0)
H6.10.140.120 Special Helix non-globular Helix Hairpins CATH (4.3.0)
G3.40.50.10830 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)CATH (4.3.0)
G6.10.140.120 Special Helix non-globular Helix Hairpins CATH (4.3.0)
F3.40.50.10830 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)CATH (4.3.0)
F6.10.140.120 Special Helix non-globular Helix Hairpins CATH (4.3.0)
E3.40.50.10830 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)CATH (4.3.0)
E6.10.140.120 Special Helix non-globular Helix Hairpins CATH (4.3.0)
D3.40.50.10830 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)CATH (4.3.0)
D6.10.140.120 Special Helix non-globular Helix Hairpins CATH (4.3.0)
C3.40.50.10830 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)CATH (4.3.0)
C6.10.140.120 Special Helix non-globular Helix Hairpins CATH (4.3.0)
B3.40.50.10830 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)CATH (4.3.0)
B6.10.140.120 Special Helix non-globular Helix Hairpins CATH (4.3.0)
A3.40.50.10830 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold F420-dependent methylenetetrahydromethanopterin dehydrogenase (MTD)CATH (4.3.0)
A6.10.140.120 Special Helix non-globular Helix Hairpins CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF01993methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase (MTD)methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D, E
F420-dependent methylenetetrahydromethanopterin dehydrogenase -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D, E
IPR036080F420-dependent methylenetetrahydromethanopterin dehydrogenase superfamilyHomologous Superfamily
A, B, C, D, E
IPR002844F420-dependent methylenetetrahydromethanopterin dehydrogenaseFamily