1U3H
Crystal structure of mouse TCR 172.10 complexed with MHC class II I-Au molecule at 2.4 A
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C | SCOP2B Superfamily | MHC antigen-recognition domain | 8055640 | 3000521 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054685 | 3000071 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054685 | 3000071 | SCOP2B (2022-06-29) |
H [auth G] | SCOP2B Superfamily | MHC antigen-recognition domain | 8055640 | 3000521 | SCOP2B (2022-06-29) |
A | SCOP2 Family | V set domains-like | 8054426 | 4007530 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Immunoglobulin (Ig) domain-like | 8054427 | 3000071 | SCOP2 (2022-06-29) |
F [auth E] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054427 | 3000071 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8055394 | 3000071 | SCOP2B (2022-06-29) |
G [auth F] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8055394 | 3000071 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | MHC antigen-recognition domain | 8036132 | 3000521 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054721 | 3000071 | SCOP2B (2022-06-29) |
I [auth H] | SCOP2B Superfamily | MHC antigen-recognition domain | 8036132 | 3000521 | SCOP2B (2022-06-29) |
I [auth H] | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054721 | 3000071 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
C | C1-set_2 | e1u3hC1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_2 | ECOD (1.6) |
C | MHC_II_alpha | e1u3hC2 | A: a+b two layers | X: MHC antigen-recognition domain (From Topology) | H: MHC antigen-recognition domain (From Topology) | T: MHC antigen-recognition domain | F: MHC_II_alpha | ECOD (1.6) |
H [auth G] | C1-set_2 | e1u3hG1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_2 | ECOD (1.6) |
H [auth G] | MHC_II_alpha | e1u3hG2 | A: a+b two layers | X: MHC antigen-recognition domain (From Topology) | H: MHC antigen-recognition domain (From Topology) | T: MHC antigen-recognition domain | F: MHC_II_alpha | ECOD (1.6) |
A | V-set_4 | e1u3hA1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_4 | ECOD (1.6) |
F [auth E] | V-set_4 | e1u3hE1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_4 | ECOD (1.6) |
B | V-set_3 | e1u3hB1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
G [auth F] | V-set_3 | e1u3hF1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: V-set_3 | ECOD (1.6) |
D | C1-set_2 | e1u3hD1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_2 | ECOD (1.6) |
D | MHC_II_beta | e1u3hD2 | A: a+b two layers | X: MHC antigen-recognition domain (From Topology) | H: MHC antigen-recognition domain (From Topology) | T: MHC antigen-recognition domain | F: MHC_II_beta | ECOD (1.6) |
I [auth H] | C1-set_2 | e1u3hH1 | A: beta sandwiches | X: Immunoglobulin-like beta-sandwich | H: Immunoglobulin-related | T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like | F: C1-set_2 | ECOD (1.6) |
I [auth H] | MHC_II_beta | e1u3hH2 | A: a+b two layers | X: MHC antigen-recognition domain (From Topology) | H: MHC antigen-recognition domain (From Topology) | T: MHC antigen-recognition domain | F: MHC_II_beta | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
IMGT Antibody Annotation IMGT Database Homepage
Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
---|---|---|---|---|---|---|---|---|
C, H [auth G] | MH2-AA_MH2-ABu | II-ALPHA | Mus musculus (house mouse) | MH2-AAu, MH2-AA-N2W | G-DOMAIN G-ALPHA, C-LIKE-DOMAIN C-LIKE | MH | MH2-ALPHA_BETA | IMGT (202436-0) |
A, F [auth E] | TR 172.10 | V-ALPHA | Mus musculus (house mouse) | TRAV14-3*01, TRAV14D-3/DV8*08, TRAJ13*01 | V-DOMAIN V-ALPHA | TR | FV-ALPHA_BETA | IMGT (202436-0) |
B, G [auth F] | TR 172.10 | V-BETA | Mus musculus (house mouse) | TRBV13-2*01, TRBV13-2*03, TRBJ2-7*01, TRBJ2-7*02 | V-DOMAIN V-BETA | TR | FV-ALPHA_BETA | IMGT (202436-0) |
D, I [auth H] | MH2-AA_MH2-ABu | II-BETA | Mus musculus (house mouse) | H2-ABu | G-DOMAIN G-BETA, C-LIKE-DOMAIN C-LIKE | MH | MH2-ALPHA_BETA | IMGT (202436-0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C, H [auth G] | PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain |
C, H [auth G] | PF00993 | Class II histocompatibility antigen, alpha domain (MHC_II_alpha) | Class II histocompatibility antigen, alpha domain | - | Domain |
A, F [auth E] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
B, G [auth F] | PF07686 | Immunoglobulin V-set domain (V-set) | Immunoglobulin V-set domain | This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others. | Domain |
D, I [auth H] | PF00969 | Class II histocompatibility antigen, beta domain (MHC_II_beta) | Class II histocompatibility antigen, beta domain | - | Domain |
D, I [auth H] | PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | - | Domain |