1TXU
Crystal Structure of the Vps9 Domain of Rabex-5
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1txua_ | All alpha proteins | VPS9 domain | VPS9 domain | VPS9 domain | Rab5 GDP/GTP exchange factor (Rabex-5) | (Homo sapiens ) [TaxId: 9606 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | KOG2319_like_2nd | e1txuA2 | A: alpha bundles | X: Bromodomain-like | H: RABEX-5 helical domain (From Topology) | T: RABEX-5 helical domain | F: KOG2319_like_2nd | ECOD (1.6) |
A | VPS9_1 | e1txuA1 | A: alpha complex topology | X: VPS9 domain (From Topology) | H: VPS9 domain (From Topology) | T: VPS9 domain | F: VPS9_1 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.246.120 | Mainly Alpha | Orthogonal Bundle | Serum Albumin | Chain A, Domain 1 | CATH (4.3.0) |
A | 1.20.1050.80 | Mainly Alpha | Up-down Bundle | Glutathione S-transferase Yfyf (Class Pi) | Chain A, domain 2 | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF18151 | Domain of unknown function (DUF5601) (DUF5601) | Domain of unknown function (DUF5601) | This domain is found in the catalytic core RABEX-5 present in Homo sapiens. RABEX, also known as Rab GTPase exchange factors, regulate endocytic trafficking through activation of the Rab families RAB5, RAB21 and RAB22. The domain is helical in nature ... | Domain | |
PF02204 | Vacuolar sorting protein 9 (VPS9) domain (VPS9) | Vacuolar sorting protein 9 (VPS9) domain | - | Family |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR002653 | Zinc finger, A20-type | Domain | |
IPR045046 | Vacuolar protein sorting-associated protein 9-like | Family | |
IPR003123 | VPS9 domain | Domain | |
IPR041545 | RABX5, catalytic core helical domain | Domain | |
IPR037191 | VPS9 domain superfamily | Homologous Superfamily |