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Crystal structure of Diaminopimelate Decarboxylase from m. jannaschii in co-complex with L-lysine External Resource: Annotation Chains Domain Info Class Fold Superfamily Family Domain Species Provenance Source (Version) D d1twid1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like Alanine racemase C-terminal domain-like Eukaryotic ODC-like Diaminopimelate decarboxylase LysA Methanocaldococcus jannaschii ) [TaxId: 2190 ], SCOPe (2.08) D d1twid2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel PLP-binding barrel Alanine racemase-like, N-terminal domain Diaminopimelate decarboxylase LysA Methanocaldococcus jannaschii ) [TaxId: 2190 ], SCOPe (2.08) C d1twic1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like Alanine racemase C-terminal domain-like Eukaryotic ODC-like Diaminopimelate decarboxylase LysA Methanocaldococcus jannaschii ) [TaxId: 2190 ], SCOPe (2.08) C d1twic2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel PLP-binding barrel Alanine racemase-like, N-terminal domain Diaminopimelate decarboxylase LysA Methanocaldococcus jannaschii ) [TaxId: 2190 ], SCOPe (2.08) B d1twib1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like Alanine racemase C-terminal domain-like Eukaryotic ODC-like Diaminopimelate decarboxylase LysA Methanocaldococcus jannaschii ) [TaxId: 2190 ], SCOPe (2.08) B d1twib2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel PLP-binding barrel Alanine racemase-like, N-terminal domain Diaminopimelate decarboxylase LysA Methanocaldococcus jannaschii ) [TaxId: 2190 ], SCOPe (2.08) A d1twia1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like Alanine racemase C-terminal domain-like Eukaryotic ODC-like Diaminopimelate decarboxylase LysA Methanocaldococcus jannaschii ) [TaxId: 2190 ], SCOPe (2.08) A d1twia2 Alpha and beta proteins (a/b) TIM beta/alpha-barrel PLP-binding barrel Alanine racemase-like, N-terminal domain Diaminopimelate decarboxylase LysA Methanocaldococcus jannaschii ) [TaxId: 2190 ], SCOPe (2.08)
Chains Type Family Name Domain Identifier Family Identifier Provenance Source (Version) D SCOP2B Superfamily Alanine racemase C-terminal domain-like 8040501 3001044 SCOP2B (2022-06-29) D SCOP2B Superfamily Alanine racemase C-terminal domain-like 8040501 3001044 SCOP2B (2022-06-29) D SCOP2B Superfamily PLP-binding barrel 8040495 3000273 SCOP2B (2022-06-29) C SCOP2B Superfamily Alanine racemase C-terminal domain-like 8040501 3001044 SCOP2B (2022-06-29) C SCOP2B Superfamily Alanine racemase C-terminal domain-like 8040501 3001044 SCOP2B (2022-06-29) C SCOP2B Superfamily PLP-binding barrel 8040495 3000273 SCOP2B (2022-06-29) B SCOP2B Superfamily Alanine racemase C-terminal domain-like 8040501 3001044 SCOP2B (2022-06-29) B SCOP2B Superfamily Alanine racemase C-terminal domain-like 8040501 3001044 SCOP2B (2022-06-29) B SCOP2B Superfamily PLP-binding barrel 8040495 3000273 SCOP2B (2022-06-29) A SCOP2 Family Alanine racemase-like, N-terminal domain 8028116 4003111 SCOP2 (2022-06-29) A SCOP2 Family Eukaryotic ODC-like 8028122 4003520 SCOP2 (2022-06-29) A SCOP2 Superfamily PLP-binding barrel 8040495 3000273 SCOP2 (2022-06-29) A SCOP2 Superfamily Alanine racemase C-terminal domain-like 8040501 3001044 SCOP2 (2022-06-29)
Chains Family Name Domain Identifier Architecture Possible Homology Homology Topology Family Provenance Source (Version) D Trypsin e1twiD1 A: alpha arrays X: cradle loop barrel H: RIFT-related T: Alanine racemase-C F: Trypsin ECOD (v295.2) D NAD_binding_3 e1twiD2 A: alpha arrays X: C-terminal subdomain in Lon-related proteases catalytic domains H: C-terminal subdomain in Lon-related proteases catalytic domains T: C-terminal subdomain in Lon-related proteases catalytic domains F: NAD_binding_3 ECOD (v295.2) C Trypsin e1twiC1 A: alpha arrays X: cradle loop barrel H: RIFT-related T: Alanine racemase-C F: Trypsin ECOD (v295.2) C NAD_binding_3 e1twiC2 A: alpha arrays X: C-terminal subdomain in Lon-related proteases catalytic domains H: C-terminal subdomain in Lon-related proteases catalytic domains T: C-terminal subdomain in Lon-related proteases catalytic domains F: NAD_binding_3 ECOD (v295.2) B Trypsin e1twiB1 A: alpha arrays X: cradle loop barrel H: RIFT-related T: Alanine racemase-C F: Trypsin ECOD (v295.2) B NAD_binding_3 e1twiB2 A: alpha arrays X: C-terminal subdomain in Lon-related proteases catalytic domains H: C-terminal subdomain in Lon-related proteases catalytic domains T: C-terminal subdomain in Lon-related proteases catalytic domains F: NAD_binding_3 ECOD (v295.2) A Orn_DAP_Arg_deC e1twiA1 A: beta barrels X: cradle loop barrel H: RIFT-related T: Alanine racemase-C F: Orn_DAP_Arg_deC ECOD (v295.2) A Ala_racemase_N e1twiA2 A: a/b barrels X: TIM beta/alpha-barrel H: TIM barrels T: TIM barrels F: Ala_racemase_N ECOD (v295.2)
Chains Polymer Molecular Function Biological Process Cellular Component Diaminopimelate decarboxylase - -