1TO0 | pdb_00001to0

X-ray structure of Northeast Structural Genomics target protein sr145 from Bacillus subtilis

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d1to0h_	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein YydA	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
G	d1to0g_	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein YydA	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
F	d1to0f_	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein YydA	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
E	d1to0e_	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein YydA	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
D	d1to0d_	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein YydA	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
C	d1to0c_	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein YydA	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
B	d1to0b_	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein YydA	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)
A	d1to0a_	Alpha and beta proteins (a/b)	alpha/beta knot	alpha/beta knot	YbeA-like	Hypothetical protein YydA	(Bacillus subtilis ) [TaxId: 1423 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	alpha/beta knot	8040327	3001122	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	alpha/beta knot	8040327	3001122	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	alpha/beta knot	8040327	3001122	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	alpha/beta knot	8040327	3001122	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	alpha/beta knot	8040327	3001122	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	alpha/beta knot	8040327	3001122	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	alpha/beta knot	8040327	3001122	SCOP2B (2022-06-29)
A	SCOP2 Family	YbeA-like	8027948	4002973	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	alpha/beta knot	8040327	3001122	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	SPOUT_MTase	e1to0H1	A: a/b three-layered sandwiches	X: alpha/beta knot (From Topology)	H: alpha/beta knot (From Topology)	T: alpha/beta knot	F: SPOUT_MTase	ECOD (1.6)
G	SPOUT_MTase	e1to0G1	A: a/b three-layered sandwiches	X: alpha/beta knot (From Topology)	H: alpha/beta knot (From Topology)	T: alpha/beta knot	F: SPOUT_MTase	ECOD (1.6)
F	SPOUT_MTase	e1to0F1	A: a/b three-layered sandwiches	X: alpha/beta knot (From Topology)	H: alpha/beta knot (From Topology)	T: alpha/beta knot	F: SPOUT_MTase	ECOD (1.6)
E	SPOUT_MTase	e1to0E1	A: a/b three-layered sandwiches	X: alpha/beta knot (From Topology)	H: alpha/beta knot (From Topology)	T: alpha/beta knot	F: SPOUT_MTase	ECOD (1.6)
D	SPOUT_MTase	e1to0D1	A: a/b three-layered sandwiches	X: alpha/beta knot (From Topology)	H: alpha/beta knot (From Topology)	T: alpha/beta knot	F: SPOUT_MTase	ECOD (1.6)
C	SPOUT_MTase	e1to0C1	A: a/b three-layered sandwiches	X: alpha/beta knot (From Topology)	H: alpha/beta knot (From Topology)	T: alpha/beta knot	F: SPOUT_MTase	ECOD (1.6)
B	SPOUT_MTase	e1to0B1	A: a/b three-layered sandwiches	X: alpha/beta knot (From Topology)	H: alpha/beta knot (From Topology)	T: alpha/beta knot	F: SPOUT_MTase	ECOD (1.6)
A	SPOUT_MTase	e1to0A1	A: a/b three-layered sandwiches	X: alpha/beta knot (From Topology)	H: alpha/beta knot (From Topology)	T: alpha/beta knot	F: SPOUT_MTase	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)
G	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)
F	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)
E	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)
D	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)
C	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)
B	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)
A	3.40.1280.10	Alpha Beta	3-Layer(aba) Sandwich	Alpha/beta knot	SPOUT methyltransferase, trefoil knot domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF02590	Predicted SPOUT methyltransferase (SPOUT_MTase)	Predicted SPOUT methyltransferase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Hypothetical UPF0247 protein yyda	RNA methyltransferase activity rRNA methyltransferase activity rRNA (pseudouridine-N3-)-methyltransferase activity catalytic activity, acting on RNA transferase activity, transferring one-carbon groups catalytic activity, acting on a nucleic acid transferase activity catalytic activity, acting on a rRNA S-adenosylmethionine-dependent methyltransferase activity rRNA (pseudouridine) methyltransferase activity methyltransferase activity catalytic activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR029026	tRNA (guanine-N1-)-methyltransferase, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR029028	Alpha/beta knot methyltransferases	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR003742	RNA methyltransferase RlmH	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.