1TC5 | pdb_00001tc5

Structural Analysis of a probable eukaryotic D-amino acid tRNA deacylase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1tc5d1	Alpha and beta proteins (a/b)	DTD-like	DTD-like	DTD-like	probable eukaryotic D-amino acid tRNA deacylase	(Leishmania major ) [TaxId: 5664 ],	SCOPe (2.08)
D	d1tc5d2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Leishmania major ) [TaxId: 5664 ],	SCOPe (2.08)
C	d1tc5c1	Alpha and beta proteins (a/b)	DTD-like	DTD-like	DTD-like	probable eukaryotic D-amino acid tRNA deacylase	(Leishmania major ) [TaxId: 5664 ],	SCOPe (2.08)
C	d1tc5c2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Leishmania major ) [TaxId: 5664 ],	SCOPe (2.08)
B	d1tc5b1	Alpha and beta proteins (a/b)	DTD-like	DTD-like	DTD-like	probable eukaryotic D-amino acid tRNA deacylase	(Leishmania major ) [TaxId: 5664 ],	SCOPe (2.08)
B	d1tc5b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Leishmania major ) [TaxId: 5664 ],	SCOPe (2.08)
A	d1tc5a1	Alpha and beta proteins (a/b)	DTD-like	DTD-like	DTD-like	probable eukaryotic D-amino acid tRNA deacylase	(Leishmania major ) [TaxId: 5664 ],	SCOPe (2.08)
A	d1tc5a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Leishmania major ) [TaxId: 5664 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	DTD-like	8040118	3000522	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	DTD-like	8040118	3000522	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	DTD-like	8040118	3000522	SCOP2B (2022-06-29)
A	SCOP2 Family	DTD-like	8027739	4003261	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	DTD-like	8040118	3000522	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D		e1tc5D1	A: HTH	X: HTH	H: winged helix domain	T: EF-hand_1, EF-hand_7	F:	ECOD (20:10:01)
C		e1tc5C1	A: HTH	X: HTH	H: winged helix domain	T: EF-hand_1, EF-hand_7	F:	ECOD (20:10:01)
B		e1tc5B1	A: HTH	X: HTH	H: winged helix domain	T: EF-hand_1, EF-hand_7	F:	ECOD (20:10:01)
A		e1tc5A1	A: DTD-like	X: Inserted a+b domain in Dac-like proteins	H: Inserted a+b domain in Dac-like proteins	T: Peptidase_S13	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.50.80.10	Alpha Beta	3-Layer(bba) Sandwich	D-tyrosyl-trna(Tyr) Deacylase	Chain: A	CATH (4.3.0)
C	3.50.80.10	Alpha Beta	3-Layer(bba) Sandwich	D-tyrosyl-trna(Tyr) Deacylase	Chain: A	CATH (4.3.0)
B	3.50.80.10	Alpha Beta	3-Layer(bba) Sandwich	D-tyrosyl-trna(Tyr) Deacylase	Chain: A	CATH (4.3.0)
A	3.50.80.10	Alpha Beta	3-Layer(bba) Sandwich	D-tyrosyl-trna(Tyr) Deacylase	Chain: A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Probable eukaryotic D-amino acid tRNA deacylase, LMAJ005534AAA	aminoacyl-tRNA deacylase activity hydrolase activity, acting on ester bonds catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid D-aminoacyl-tRNA deacylase activity deacylase activity carboxylic ester hydrolase activity hydrolase activity catalytic activity, acting on a tRNA catalytic activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR003732	D-aminoacyl-tRNA deacylase DTD	Family
A, B, C, D	IPR023509	D-aminoacyl-tRNA deacylase-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.