Annotations: 1T6P

Crystal Structure of Phenylalanine Ammonia Lyase from Rhodosporidium toruloides

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1t6pa_	All alpha proteins	L-aspartase-like	L-aspartase-like	HAL/PAL-like	Phenylalanine ammonia-lyase, PAL	(Rhodotorula toruloides ) [TaxId: 5286 ],	SCOPe (2.08)
B	d1t6pb_	All alpha proteins	L-aspartase-like	L-aspartase-like	HAL/PAL-like	Phenylalanine ammonia-lyase, PAL	(Rhodotorula toruloides ) [TaxId: 5286 ],	SCOPe (2.08)
C	d1t6pc_	All alpha proteins	L-aspartase-like	L-aspartase-like	HAL/PAL-like	Phenylalanine ammonia-lyase, PAL	(Rhodotorula toruloides ) [TaxId: 5286 ],	SCOPe (2.08)
D	d1t6pd_	All alpha proteins	L-aspartase-like	L-aspartase-like	HAL/PAL-like	Phenylalanine ammonia-lyase, PAL	(Rhodotorula toruloides ) [TaxId: 5286 ],	SCOPe (2.08)
E	d1t6pe_	All alpha proteins	L-aspartase-like	L-aspartase-like	HAL/PAL-like	Phenylalanine ammonia-lyase, PAL	(Rhodotorula toruloides ) [TaxId: 5286 ],	SCOPe (2.08)
F	d1t6pf_	All alpha proteins	L-aspartase-like	L-aspartase-like	HAL/PAL-like	Phenylalanine ammonia-lyase, PAL	(Rhodotorula toruloides ) [TaxId: 5286 ],	SCOPe (2.08)
G	d1t6pg_	All alpha proteins	L-aspartase-like	L-aspartase-like	HAL/PAL-like	Phenylalanine ammonia-lyase, PAL	(Rhodotorula toruloides ) [TaxId: 5286 ],	SCOPe (2.08)
H	d1t6ph_	All alpha proteins	L-aspartase-like	L-aspartase-like	HAL/PAL-like	Phenylalanine ammonia-lyase, PAL	(Rhodotorula toruloides ) [TaxId: 5286 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	L-aspartase-like	8042400	3001572	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	L-aspartase-like	8042400	3001572	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	L-aspartase-like	8042400	3001572	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	L-aspartase-like	8042400	3001572	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	L-aspartase-like	8042400	3001572	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	L-aspartase-like	8042400	3001572	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	L-aspartase-like	8042400	3001572	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	L-aspartase-like	8042400	3001572	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	tRNA-synt_2d	e1t6pA1	A: a/b three-layered sandwiches	X: barrel domains in phase 1 flagellin	H: Class II aaRS and biotin synthetases	T: Class II aaRS and biotin synthetases	F: tRNA-synt_2d	ECOD (v294.1)
B	tRNA-synt_2d	e1t6pB1	A: a/b three-layered sandwiches	X: barrel domains in phase 1 flagellin	H: Class II aaRS and biotin synthetases	T: Class II aaRS and biotin synthetases	F: tRNA-synt_2d	ECOD (v294.1)
C	Lyase_aromatic	e1t6pC3	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_aromatic	ECOD (v294.1)
C	Pyr_redox_2	e1t6pC2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Pyr_redox_2	ECOD (v294.1)
C	Cobalamin_bind	e1t6pC4	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Cobalamin_bind	ECOD (v294.1)
D	Lyase_aromatic	e1t6pD3	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_aromatic	ECOD (v294.1)
D	Pyr_redox_2	e1t6pD2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Pyr_redox_2	ECOD (v294.1)
D	Cobalamin_bind	e1t6pD4	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Cobalamin_bind	ECOD (v294.1)
E	ChapFlgA	e1t6pE1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: Thioredoxin-like	T: Thioredoxin-like	F: ChapFlgA	ECOD (v294.1)
F	ChapFlgA	e1t6pF1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: Thioredoxin-like	T: Thioredoxin-like	F: ChapFlgA	ECOD (v294.1)
G	ChapFlgA	e1t6pG1	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: Thioredoxin-like	T: Thioredoxin-like	F: ChapFlgA	ECOD (v294.1)
H	Lyase_aromatic	e1t6pH3	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_aromatic	ECOD (v294.1)
H	Pyr_redox_2	e1t6pH2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Pyr_redox_2	ECOD (v294.1)
H	Cobalamin_bind	e1t6pH4	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Cobalamin_bind	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.275.10	Mainly Alpha	Orthogonal Bundle	Fumarase C	Chain B, domain 1	CATH (4.3.0)
A	1.20.200.10	Mainly Alpha	Up-down Bundle	Fumarase C	Chain A, domain 2	CATH (4.3.0)
A	1.10.274.20	Mainly Alpha	Orthogonal Bundle	Enzyme I	Chain A, domain 2	CATH (4.3.0)
B	1.10.275.10	Mainly Alpha	Orthogonal Bundle	Fumarase C	Chain B, domain 1	CATH (4.3.0)
B	1.20.200.10	Mainly Alpha	Up-down Bundle	Fumarase C	Chain A, domain 2	CATH (4.3.0)
B	1.10.274.20	Mainly Alpha	Orthogonal Bundle	Enzyme I	Chain A, domain 2	CATH (4.3.0)
C	1.10.275.10	Mainly Alpha	Orthogonal Bundle	Fumarase C	Chain B, domain 1	CATH (4.3.0)
C	1.20.200.10	Mainly Alpha	Up-down Bundle	Fumarase C	Chain A, domain 2	CATH (4.3.0)
C	1.10.274.20	Mainly Alpha	Orthogonal Bundle	Enzyme I	Chain A, domain 2	CATH (4.3.0)
D	1.10.275.10	Mainly Alpha	Orthogonal Bundle	Fumarase C	Chain B, domain 1	CATH (4.3.0)
D	1.20.200.10	Mainly Alpha	Up-down Bundle	Fumarase C	Chain A, domain 2	CATH (4.3.0)
D	1.10.274.20	Mainly Alpha	Orthogonal Bundle	Enzyme I	Chain A, domain 2	CATH (4.3.0)
E	1.10.275.10	Mainly Alpha	Orthogonal Bundle	Fumarase C	Chain B, domain 1	CATH (4.3.0)
E	1.20.200.10	Mainly Alpha	Up-down Bundle	Fumarase C	Chain A, domain 2	CATH (4.3.0)
E	1.10.274.20	Mainly Alpha	Orthogonal Bundle	Enzyme I	Chain A, domain 2	CATH (4.3.0)
F	1.10.275.10	Mainly Alpha	Orthogonal Bundle	Fumarase C	Chain B, domain 1	CATH (4.3.0)
F	1.20.200.10	Mainly Alpha	Up-down Bundle	Fumarase C	Chain A, domain 2	CATH (4.3.0)
F	1.10.274.20	Mainly Alpha	Orthogonal Bundle	Enzyme I	Chain A, domain 2	CATH (4.3.0)
G	1.10.275.10	Mainly Alpha	Orthogonal Bundle	Fumarase C	Chain B, domain 1	CATH (4.3.0)
G	1.20.200.10	Mainly Alpha	Up-down Bundle	Fumarase C	Chain A, domain 2	CATH (4.3.0)
G	1.10.274.20	Mainly Alpha	Orthogonal Bundle	Enzyme I	Chain A, domain 2	CATH (4.3.0)
H	1.10.275.10	Mainly Alpha	Orthogonal Bundle	Fumarase C	Chain B, domain 1	CATH (4.3.0)
H	1.20.200.10	Mainly Alpha	Up-down Bundle	Fumarase C	Chain A, domain 2	CATH (4.3.0)
H	1.10.274.20	Mainly Alpha	Orthogonal Bundle	Enzyme I	Chain A, domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	phenylalanine ammonia-lyase	phenylalanine ammonia-lyase activity lyase activity ammonia-lyase activity catalytic activity carbon-nitrogen lyase activity tyrosine ammonia-lyase activity	catabolic process oxoacid metabolic process aromatic amino acid family catabolic process amino acid metabolic process organic acid catabolic process organic acid metabolic process alpha-amino acid metabolic process carboxylic acid catabolic process small molecule metabolic process amino acid catabolic process L-phenylalanine catabolic process aromatic amino acid metabolic process L-amino acid catabolic process carboxylic acid metabolic process catabolic process oxoacid metabolic process aromatic amino acid family catabolic process amino acid metabolic process organic acid catabolic process organic acid metabolic process alpha-amino acid metabolic process carboxylic acid catabolic process small molecule metabolic process amino acid catabolic process L-phenylalanine catabolic process aromatic amino acid metabolic process L-amino acid catabolic process carboxylic acid metabolic process primary metabolic process L-amino acid metabolic process L-phenylalanine metabolic process proteinogenic amino acid metabolic process alpha-amino acid catabolic process proteinogenic amino acid catabolic process metabolic process cellular process small molecule catabolic process phenylpropanoid metabolic process cinnamic acid biosynthetic process monocarboxylic acid biosynthetic process benzene-containing compound metabolic process small molecule biosynthetic process olefinic compound biosynthetic process organic acid biosynthetic process phenylpropanoid biosynthetic process carboxylic acid biosynthetic process secondary metabolic process biosynthetic process secondary metabolite biosynthetic process olefinic compound metabolic process monocarboxylic acid metabolic process cinnamic acid metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR005922	Phenylalanine ammonia-lyase	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR024083	Fumarase/histidase, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001106	Aromatic amino acid lyase	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR022313	Phenylalanine/histidine ammonia-lyases, active site	Active Site
A, B, C, D, E A, B, C, D, E, F, G, H	IPR008948	L-Aspartase-like	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR023144	Phenylalanine ammonia-lyase, shielding domain superfamily	Homologous Superfamily