1SKV | pdb_00001skv

Crystal Structure of D-63 from Sulfolobus Spindle Virus 1

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1skvd1	All alpha proteins	ROP-like	Hypothetical protein D-63	Hypothetical protein D-63	Hypothetical protein D-63	(Sulfolobus spindle-shaped virus 1 ) [TaxId: 244589 ],	SCOPe (2.08)
D	d1skvd2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Sulfolobus spindle-shaped virus 1 ) [TaxId: 244589 ],	SCOPe (2.08)
C	d1skvc1	All alpha proteins	ROP-like	Hypothetical protein D-63	Hypothetical protein D-63	Hypothetical protein D-63	(Sulfolobus spindle-shaped virus 1 ) [TaxId: 244589 ],	SCOPe (2.08)
C	d1skvc2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Sulfolobus spindle-shaped virus 1 ) [TaxId: 244589 ],	SCOPe (2.08)
B	d1skvb1	All alpha proteins	ROP-like	Hypothetical protein D-63	Hypothetical protein D-63	Hypothetical protein D-63	(Sulfolobus spindle-shaped virus 1 ) [TaxId: 244589 ],	SCOPe (2.08)
B	d1skvb2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Sulfolobus spindle-shaped virus 1 ) [TaxId: 244589 ],	SCOPe (2.08)
A	d1skva1	All alpha proteins	ROP-like	Hypothetical protein D-63	Hypothetical protein D-63	Hypothetical protein D-63	(Sulfolobus spindle-shaped virus 1 ) [TaxId: 244589 ],	SCOPe (2.08)
A	d1skva2	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Sulfolobus spindle-shaped virus 1 ) [TaxId: 244589 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Hypothetical protein D-63	8039552	3001202	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Hypothetical protein D-63	8039552	3001202	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Hypothetical protein D-63	8039552	3001202	SCOP2B (2022-06-29)
A	SCOP2 Family	Hypothetical protein D-63	8027173	4002414	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Hypothetical protein D-63	8039552	3001202	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Tryp_alpha_amyl	e1skvD1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Ankyrin repeat	T: Ankyrin repeat	F: Tryp_alpha_amyl	ECOD (v294.1)
C	Tryp_alpha_amyl	e1skvC1	A: a/b three-layered sandwiches	X: ETN0001 domain-like	H: Ankyrin repeat	T: Ankyrin repeat	F: Tryp_alpha_amyl	ECOD (v294.1)
B	Chal_sti_synt_C	e1skvB1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Chal_sti_synt_C	ECOD (v294.1)
A	Chal_sti_synt_C	e1skvA1	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: Chal_sti_synt_C	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.287.660	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
C	1.10.287.660	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
B	1.10.287.660	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)
A	1.10.287.660	Mainly Alpha	Orthogonal Bundle	Helix Hairpins	Helix hairpin bin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF20940	Sulfolobus spindle-shape virus 1, protein D-63 (SSV1_D-63)	Sulfolobus spindle-shape virus 1, protein D-63	-	Family

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR048986	Protein D-63	Family
A, B, C, D	IPR037292	Protein D-63 superfamily	Homologous Superfamily
A, B, C, D	IPR029012	Helix hairpin bin domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.