1S31

Crystal Structure Analysis of the human Tub protein (isoform a) spanning residues 289 through 561

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Membrane Protein Annotation: OPM

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1s31a_	Alpha and beta proteins (a+b)	Tubby C-terminal domain-like	Tubby C-terminal domain-like	Transcriptional factor tubby, C-terminal domain	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Transcriptional factor tubby C-terminal domain	8045356	4001052	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Tubby C-terminal domain-like	8090319	3000593	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF01167	e1s31A1	A: beta barrels	X: Transcriptional factor tubby, C-terminal domain (From Topology)	H: Transcriptional factor tubby, C-terminal domain (From Topology)	T: Transcriptional factor tubby, C-terminal domain	F: PF01167	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.90.10	Alpha Beta	Alpha-Beta Barrel	Tubby Protein	Chain A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF16322	Tubby N-terminal (Tub_N)	Tubby N-terminal	-	Family
A	PF01167	Tub family (Tub)	Tub family	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	tubby isoform a	protein-containing complex binding binding intraciliary transport particle A binding protein binding signaling receptor binding G protein-coupled receptor binding	protein localization localization cellular localization protein localization to cilium protein localization to organelle cellular macromolecule localization macromolecule localization cellular process plasma membrane bounded cell projection organization cell projection organization transport intracellular transport establishment of localization protein-containing complex localization protein localization localization cellular localization protein localization to cilium protein localization to organelle cellular macromolecule localization macromolecule localization cellular process plasma membrane bounded cell projection organization cell projection organization transport intracellular transport establishment of localization protein-containing complex localization cellular component organization organelle organization establishment of localization in cell microtubule-based transport transport along microtubule cytoskeleton-dependent intracellular transport microtubule-based movement microtubule-based process cellular component organization or biogenesis cilium organization intraciliary transport cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process response to stimulus signaling biological regulation regulation of signal transduction cell communication regulation of response to stimulus regulation of cell communication G protein-coupled receptor signaling pathway signal transduction regulation of G protein-coupled receptor signaling pathway multicellular organismal process multicellular organismal-level homeostasis homeostatic process anatomical structure homeostasis tissue homeostasis retina homeostasis photoreceptor cell maintenance protein localization to photoreceptor outer segment protein localization to non-motile cilium system process sensory perception nervous system process sensory perception of sound sensory perception of mechanical stimulus developmental process sensory organ development eye development animal organ development retina development in camera-type eye visual system development multicellular organism development camera-type eye development anatomical structure development sensory system development system development regulation of localization import into cell positive regulation of cellular component organization regulation of cellular component organization positive regulation of biological process vesicle-mediated transport positive regulation of endocytosis phagocytosis positive regulation of cellular process regulation of endocytosis regulation of transport regulation of phagocytosis regulation of vesicle-mediated transport positive regulation of phagocytosis positive regulation of transport endocytosis receptor localization to non-motile cilium protein localization to cell periphery localization within membrane protein localization to membrane protein localization to ciliary membrane phagocytosis, recognition cell recognition	membrane-bounded organelle cell projection organelle cilium cellular anatomical entity plasma membrane bounded cell projection extracellular region intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane intracellular organelle membrane-bounded organelle cell projection organelle cilium cellular anatomical entity plasma membrane bounded cell projection extracellular region intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane membrane intracellular organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR025659	Tubby-like, C-terminal	Homologous Superfamily
A	IPR000007	Tubby, C-terminal	Domain
A	IPR018066	Tubby, C-terminal, conserved site	Conserved Site
A	IPR005398	Tubby, N-terminal	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	Pharos: P50607	retinal dystrophy and obesity retinitis pigmentosa pancreatic intraductal papillary-mucinous neoplasm subependymal giant cell astrocytoma acquired metabolic disease atopic eczema breast carcinoma glioblastoma large cell medulloblastoma medulloblastoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia X-linked mixed deafness with perilymphatic gusher acute myeloid leukemia atypical teratoid rhabdoid tumor retinal dystrophy and obesity retinitis pigmentosa pancreatic intraductal papillary-mucinous neoplasm subependymal giant cell astrocytoma acquired metabolic disease atopic eczema breast carcinoma glioblastoma large cell medulloblastoma medulloblastoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia X-linked mixed deafness with perilymphatic gusher acute myeloid leukemia atypical teratoid rhabdoid tumor cone-rod dystrophy interstitial cystitis malignant ependymoma obesity disorder pancreatic intraductal papillary-mucinous carcinoma Pick disease sinusitis adrenal cortex carcinoma breast cancer cystic fibrosis invasive ductal breast carcinoma malignant glioma osteosarcoma

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A	OPM				Transcriptional factor tubby

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.