Crystal Structure of AAV Rep complexed with the Rep-binding sequence
External Resource: Annotation
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
| G [auth E] | d1rz9e_ | Alpha and beta proteins (a+b) | Origin of replication-binding domain, RBD-like | Origin of replication-binding domain, RBD-like | Replication protein Rep, nuclease domain | Replication protein Rep, nuclease domain | (adeno-associated virus 5 ) [TaxId: 82300 ], | SCOPe (2.08) |
| F [auth D] | d1rz9d_ | Alpha and beta proteins (a+b) | Origin of replication-binding domain, RBD-like | Origin of replication-binding domain, RBD-like | Replication protein Rep, nuclease domain | Replication protein Rep, nuclease domain | (adeno-associated virus 5 ) [TaxId: 82300 ], | SCOPe (2.08) |
| E [auth C] | d1rz9c_ | Alpha and beta proteins (a+b) | Origin of replication-binding domain, RBD-like | Origin of replication-binding domain, RBD-like | Replication protein Rep, nuclease domain | Replication protein Rep, nuclease domain | (adeno-associated virus 5 ) [TaxId: 82300 ], | SCOPe (2.08) |
| D [auth B] | d1rz9b_ | Alpha and beta proteins (a+b) | Origin of replication-binding domain, RBD-like | Origin of replication-binding domain, RBD-like | Replication protein Rep, nuclease domain | Replication protein Rep, nuclease domain | (adeno-associated virus 5 ) [TaxId: 82300 ], | SCOPe (2.08) |
| C [auth A] | d1rz9a_ | Alpha and beta proteins (a+b) | Origin of replication-binding domain, RBD-like | Origin of replication-binding domain, RBD-like | Replication protein Rep, nuclease domain | Replication protein Rep, nuclease domain | (adeno-associated virus 5 ) [TaxId: 82300 ], | SCOPe (2.08) |
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
| G [auth E] | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8041603 | 3001937 | SCOP2B (2022-06-29) |
| F [auth D] | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8041603 | 3001937 | SCOP2B (2022-06-29) |
| E [auth C] | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8041603 | 3001937 | SCOP2B (2022-06-29) |
| D [auth B] | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8041603 | 3001937 | SCOP2B (2022-06-29) |
| C [auth A] | SCOP2B Superfamily | Origin of replication-binding domain, RBD-like | 8041603 | 3001937 | SCOP2B (2022-06-29) |
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
| G [auth E] | Rep_N | e1rz9E1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_N | ECOD (1.6) |
| F [auth D] | Rep_N | e1rz9D1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_N | ECOD (1.6) |
| E [auth C] | Rep_N | e1rz9C1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_N | ECOD (1.6) |
| D [auth B] | Rep_N | e1rz9B1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_N | ECOD (1.6) |
| C [auth A] | Rep_N | e1rz9A1 | A: a+b two layers | X: Alpha-beta plaits | H: Origin of replication-binding domains | T: Origin of replication-binding domains | F: Rep_N | ECOD (1.6) |
| Chains | Accession | Name | Type |
|---|
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E] | IPR014835 | NS1 nuclease, NS1-Nuc domain, parvovirinae | Domain |
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E] | IPR014015 | Helicase, superfamily 3, DNA virus | Domain |
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E] | IPR049901 | NS1 nuclease, NS1-Nuc domain, Parvovirus | Domain |
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E] | IPR001257 | Parvovirus non-structural protein 1, helicase domain | Domain |
C [auth A], D [auth B], E [auth C], F [auth D], G [auth E] | IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |