1RQB | pdb_00001rqb

Propionibacterium shermanii transcarboxylase 5S subunit

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1rqba1	All alpha proteins	RuvA C-terminal domain-like	post-HMGL domain-like	Conserved carboxylase domain	Transcarboxylase 5S subunit, C-terminal domain	(Propionibacterium freudenreichii subsp. shermanii ) [TaxId: 1752 ],	SCOPe (2.08)
A	d1rqba2	Alpha and beta proteins (a/b)	TIM beta/alpha-barrel	Aldolase	HMGL-like	Transcarboxylase 5S subunit, N-terminal domain	(Propionibacterium freudenreichii subsp. shermanii ) [TaxId: 1752 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Conserved carboxylase domain	8026515	4002321	SCOP2 (2022-06-29)
A	SCOP2 Family	HMGL-like	8026516	4000416	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	post-HMGL domain-like	8038894	3001285	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Aldolase	8038895	3000445	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PYC_OADA_2nd	e1rqbA2	A: alpha arrays	X: RuvA-C	H: post-HMGL domain-like (From Topology)	T: post-HMGL domain-like	F: PYC_OADA_2nd	ECOD (1.6)
A	PYC_OADA_1st	e1rqbA1	A: alpha arrays	X: RuvA-C	H: post-HMGL domain-like (From Topology)	T: post-HMGL domain-like	F: PYC_OADA_1st	ECOD (1.6)
A	HMGL-like_2	e1rqbA3	A: a/b barrels	X: TIM beta/alpha-barrel	H: TIM barrels (From Topology)	T: TIM barrels	F: HMGL-like_2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.20.20.70	Alpha Beta	Alpha-Beta Barrel	TIM Barrel	Aldolase class I	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	transcarboxylase 5S subunit	carboxyl- or carbamoyltransferase activity methylmalonyl-CoA carboxytransferase activity transferase activity, transferring one-carbon groups transferase activity catalytic activity pyruvate carboxylase activity ligase activity, forming carbon-carbon bonds ligase activity cation binding ion binding binding metal ion binding small molecule binding	monosaccharide metabolic process carbohydrate metabolic process small molecule biosynthetic process carbohydrate biosynthetic process hexose metabolic process primary metabolic process monosaccharide biosynthetic process gluconeogenesis hexose biosynthetic process biosynthetic process small molecule metabolic process metabolic process cellular process glucose metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR003379	Carboxylase, conserved domain	Domain
A	IPR055268	Pyruvate carboxylase-like	Family
A	IPR013785	Aldolase-type TIM barrel	Homologous Superfamily
A	IPR000891	Pyruvate carboxyltransferase	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.