1RH1
crystal structure of the cytotoxic bacterial protein colicin B at 2.5 A resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1rh1a1 | All beta proteins | Cloacin translocation domain | Cloacin translocation domain | Cloacin translocation domain | Colicin B N-terminal domain | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
A | d1rh1a2 | Membrane and cell surface proteins and peptides | Toxins' membrane translocation domains | Colicin | Colicin | Colicin B C-terminal domain | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2 Family | Cloacin translocation domain | 8028247 | 4003169 | SCOP2 (2022-06-29) |
A | SCOP2 Family | Colicin | 8028248 | 4002963 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Cloacin translocation domain | 8040626 | 3000374 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Colicin | 8040627 | 3001946 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | Cloacin | e1rh1A1 | A: beta complex topology | X: Cloacin translocation domain (From Topology) | H: Cloacin translocation domain (From Topology) | T: Cloacin translocation domain | F: Cloacin | ECOD (1.6) |
A | Colicin | e1rh1A2 | A: alpha arrays | X: Toxins' membrane translocation domains | H: Colicin (From Topology) | T: Colicin | F: Colicin | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 1.10.490.30 | Mainly Alpha | Orthogonal Bundle | Globin-like | Colicin | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF01024 | Colicin pore forming domain (Colicin) | Colicin pore forming domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR016128 | Pyosin/cloacin translocation domain | Domain | |
IPR036302 | Pyosin/cloacin translocation domain superfamily | Homologous Superfamily | |
IPR038283 | Channel forming colicin, C-terminal domain superfamily | Homologous Superfamily | |
IPR000293 | Channel forming colicin, C-terminal cytotoxic | Domain |