1RFB

CRYSTAL STRUCTURE OF RECOMBINANT BOVINE INTERFERON-GAMMA AT 3.0 ANGSTROMS RESOLUTION

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1rfba_	All alpha proteins	4-helical cytokines	4-helical cytokines	Interferons/interleukin-10 (IL-10)	Interferon-gamma	cattle (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)
B	d1rfbb_	All alpha proteins	4-helical cytokines	4-helical cytokines	Interferons/interleukin-10 (IL-10)	Interferon-gamma	cattle (Bos taurus ) [TaxId: 9913 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	4-helical cytokines	8037121	3001717	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	4-helical cytokines	8037121	3001717	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	IFN-gamma	e1rfbA1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: 4-helical cytokines (From Topology)	T: 4-helical cytokines	F: IFN-gamma	ECOD (1.6)
B	IFN-gamma	e1rfbB1	A: alpha bundles	X: Ferritin/Heme oxygenase/4-helical cytokines	H: 4-helical cytokines (From Topology)	T: 4-helical cytokines	F: IFN-gamma	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.1250.10	Mainly Alpha	Up-down Bundle	Growth Hormone	Chain: A	CATH (4.3.0)
B	1.20.1250.10	Mainly Alpha	Up-down Bundle	Growth Hormone	Chain: A	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00714	Interferon gamma (IFN-gamma)	Interferon gamma	-	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	INTERFERON-GAMMA	type II interferon receptor binding protein binding binding signaling receptor binding cytokine receptor binding molecular function activator activity molecular function regulator activity cytokine activity signaling receptor regulator activity receptor ligand activity signaling receptor activator activity	regulation of cellular process negative regulation of biological process negative regulation of nitrogen compound metabolic process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process regulation of nitrogen compound metabolic process DNA-templated transcription regulation of RNA metabolic process heterocycle metabolic process organic substance biosynthetic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of cellular process negative regulation of biological process negative regulation of nitrogen compound metabolic process negative regulation of cellular metabolic process regulation of primary metabolic process negative regulation of RNA biosynthetic process nucleobase-containing compound metabolic process regulation of nitrogen compound metabolic process DNA-templated transcription regulation of RNA metabolic process heterocycle metabolic process organic substance biosynthetic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process negative regulation of DNA-templated transcription regulation of biological process cellular metabolic process negative regulation of metabolic process cellular nitrogen compound metabolic process primary metabolic process regulation of cellular metabolic process negative regulation of cellular biosynthetic process organic cyclic compound metabolic process regulation of gene expression biosynthetic process aromatic compound biosynthetic process negative regulation of macromolecule biosynthetic process organic cyclic compound biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process cellular biosynthetic process RNA metabolic process RNA biosynthetic process nucleic acid biosynthetic process organic substance metabolic process negative regulation of cellular process nitrogen compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process biological regulation regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process heterocycle biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of cellular biosynthetic process negative regulation of biosynthetic process cellular process cellular aromatic compound metabolic process positive regulation of biological process positive regulation of cellular metabolic process cellular nitrogen compound biosynthetic process nitric oxide metabolic process positive regulation of metabolic process nitric oxide biosynthetic process positive regulation of biosynthetic process positive regulation of cellular process regulation of nitric oxide biosynthetic process reactive nitrogen species metabolic process positive regulation of nitric oxide metabolic process positive regulation of nitrogen compound metabolic process regulation of nitric oxide metabolic process positive regulation of nitric oxide biosynthetic process positive regulation of cellular biosynthetic process multicellular organismal process positive regulation of macromolecule biosynthetic process positive regulation of tumor necrosis factor superfamily cytokine production tumor necrosis factor (ligand) superfamily member 11 production cytokine production regulation of cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process positive regulation of tumor necrosis factor (ligand) superfamily member 11 production tumor necrosis factor superfamily cytokine production regulation of tumor necrosis factor (ligand) superfamily member 11 production regulation of tumor necrosis factor superfamily cytokine production positive regulation of gene expression positive regulation of multicellular organismal process positive regulation of cytokine production fat-soluble vitamin metabolic process regulation of lipid metabolic process vitamin biosynthetic process vitamin D biosynthetic process positive regulation of vitamin metabolic process regulation of small molecule metabolic process positive regulation of lipid metabolic process small molecule metabolic process regulation of vitamin metabolic process positive regulation of vitamin D biosynthetic process positive regulation of steroid biosynthetic process regulation of steroid biosynthetic process steroid metabolic process organic hydroxy compound metabolic process lipid biosynthetic process steroid biosynthetic process small molecule biosynthetic process regulation of steroid metabolic process vitamin D metabolic process regulation of vitamin D biosynthetic process vitamin metabolic process positive regulation of lipid biosynthetic process organic hydroxy compound biosynthetic process fat-soluble vitamin biosynthetic process positive regulation of steroid metabolic process regulation of lipid biosynthetic process positive regulation of small molecule metabolic process lipid metabolic process response to stimulus immune response immune system process adaptive immune response regulation of defense response regulation of response to external stimulus defense response response to external stimulus regulation of inflammatory response positive regulation of response to stimulus positive regulation of response to external stimulus positive regulation of inflammatory response regulation of response to stimulus regulation of response to stress response to stress positive regulation of defense response inflammatory response humoral immune response interleukin-6 production positive regulation of interleukin-6 production regulation of interleukin-6 production positive regulation of cellular component organization regulation of cellular component organization protein-containing complex organization positive regulation of cellular component biogenesis regulation of cellular component biogenesis cellular component organization cellular component biogenesis positive regulation of protein-containing complex assembly regulation of protein-containing complex assembly cellular component assembly protein-containing complex assembly cellular component organization or biogenesis cellular response to stimulus response to organic substance biological process involved in interspecies interaction between organisms signaling response to cytokine response to type III interferon cytokine-mediated signaling pathway response to biotic stimulus cell communication interferon-mediated signaling pathway innate immune response cellular response to cytokine stimulus cellular response to organic substance signal transduction response to external biotic stimulus cell surface receptor signaling pathway response to other organism type III interferon-mediated signaling pathway defense response to symbiont cellular response to chemical stimulus response to chemical defense response to other organism cellular response to type III interferon negative regulation of cell population proliferation cell population proliferation regulation of smooth muscle cell proliferation smooth muscle cell proliferation negative regulation of smooth muscle cell proliferation regulation of cell population proliferation muscle cell proliferation cell death extrinsic apoptotic signaling pathway apoptotic signaling pathway apoptotic process programmed cell death regulation of interleukin-12 production interleukin-12 production positive regulation of interleukin-12 production protein localization regulation of localization establishment of protein localization nitrogen compound transport nucleocytoplasmic transport nuclear transport positive regulation of establishment of protein localization localization import into nucleus cellular macromolecule localization establishment of localization in cell regulation of intracellular transport positive regulation of protein localization to nucleus organic substance transport positive regulation of protein import into nucleus intracellular transport regulation of nucleocytoplasmic transport protein localization to nucleus establishment of localization establishment of protein localization to organelle positive regulation of protein localization regulation of intracellular protein transport positive regulation of intracellular protein transport intracellular protein transport cellular localization regulation of protein localization transport positive regulation of nucleocytoplasmic transport regulation of protein localization to nucleus positive regulation of protein transport regulation of protein import into nucleus protein import into nucleus positive regulation of intracellular transport regulation of transport regulation of establishment of protein localization regulation of protein transport positive regulation of transport regulation of cellular localization protein transport macromolecule localization protein localization to organelle response to type II interferon cellular response to type II interferon type II interferon-mediated signaling pathway macrophage activation involved in immune response cell activation cell activation involved in immune response myeloid cell activation involved in immune response myeloid leukocyte activation leukocyte activation immune effector process macrophage activation leukocyte activation involved in immune response regulation of amide metabolic process amyloid precursor protein catabolic process positive regulation of protein metabolic process regulation of amyloid-beta formation positive regulation of amyloid-beta formation regulation of amyloid precursor protein catabolic process amyloid-beta metabolic process amide metabolic process protein metabolic process amyloid precursor protein metabolic process amyloid-beta formation organonitrogen compound metabolic process regulation of protein metabolic process positive regulation of amide metabolic process positive regulation of amyloid precursor protein catabolic process carbohydrate derivative metabolic process positive regulation of phosphate metabolic process regulation of fructose 1,6-bisphosphate metabolic process regulation of phosphate metabolic process positive regulation of fructose 1,6-bisphosphate metabolic process phosphate-containing compound metabolic process phosphorus metabolic process positive regulation of phosphorus metabolic process fructose 1,6-bisphosphate metabolic process organophosphate metabolic process regulation of phosphorus metabolic process positive regulation of programmed cell death positive regulation of smooth muscle cell apoptotic process muscle cell apoptotic process smooth muscle cell apoptotic process regulation of apoptotic process regulation of muscle cell apoptotic process regulation of programmed cell death regulation of smooth muscle cell apoptotic process positive regulation of apoptotic process positive regulation of muscle cell apoptotic process regulation of biological quality regulation of peptide hormone secretion regulation of hormone levels establishment of protein localization to extracellular region protein secretion regulation of protein secretion regulation of secretion regulation of hormone secretion regulation of peptide secretion hormone secretion protein localization to extracellular region peptide secretion secretion by cell regulation of secretion by cell amide transport signal release regulation of signaling secretion regulation of peptide transport cell-cell signaling export from cell peptide transport regulation of insulin secretion peptide hormone secretion hormone transport regulation of cell communication insulin secretion regulation of chemokine production chemokine production positive regulation of chemokine production cellular developmental process astrocyte differentiation cell development astrocyte activation glial cell development multicellular organism development neurogenesis astrocyte development gliogenesis cell differentiation anatomical structure development system development developmental process nervous system development central nervous system development glial cell differentiation glial cell activation neuroinflammatory response myeloid leukocyte differentiation hemopoiesis macrophage differentiation mononuclear cell differentiation myeloid cell differentiation leukocyte differentiation positive regulation of phosphorylation peptidyl-amino acid modification protein modification process positive regulation of protein phosphorylation tyrosine phosphorylation of STAT protein protein phosphorylation phosphorylation macromolecule modification cell surface receptor signaling pathway via STAT regulation of protein modification process regulation of protein phosphorylation peptidyl-tyrosine modification positive regulation of peptidyl-tyrosine phosphorylation positive regulation of protein modification process regulation of tyrosine phosphorylation of STAT protein regulation of peptidyl-tyrosine phosphorylation positive regulation of tyrosine phosphorylation of STAT protein regulation of phosphorylation peptidyl-tyrosine phosphorylation cell surface receptor signaling pathway via JAK-STAT positive regulation of interleukin-23 production interleukin-23 production regulation of interleukin-23 production regulation of alpha-beta T cell activation regulation of leukocyte activation regulation of cell activation positive regulation of T cell differentiation regulation of cell development alpha-beta T cell differentiation involved in immune response positive regulation of immune response positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation involved in immune response T cell activation alpha-beta T cell activation regulation of immune system process positive regulation of CD4-positive, alpha-beta T cell differentiation positive regulation of cell development regulation of leukocyte cell-cell adhesion positive regulation of alpha-beta T cell differentiation regulation of developmental process positive regulation of leukocyte cell-cell adhesion CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation involved in immune response CD4-positive, alpha-beta T cell differentiation positive regulation of cell-cell adhesion regulation of T cell differentiation positive regulation of lymphocyte activation alpha-beta T cell differentiation T cell activation involved in immune response positive regulation of cell differentiation positive regulation of immune effector process regulation of cell-cell adhesion positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation regulation of cell adhesion regulation of CD4-positive, alpha-beta T cell activation regulatory T cell differentiation regulation of lymphocyte activation regulation of immune effector process regulation of leukocyte differentiation regulation of cell differentiation lymphocyte differentiation CD4-positive, alpha-beta T cell differentiation involved in immune response positive regulation of developmental process positive regulation of cell activation positive regulation of leukocyte activation T cell differentiation positive regulation of immune system process positive regulation of T cell activation positive regulation of regulatory T cell differentiation positive regulation of alpha-beta T cell activation regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation regulation of immune response regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation involved in immune response regulation of CD4-positive, alpha-beta T cell differentiation regulation of alpha-beta T cell differentiation lymphocyte activation leukocyte cell-cell adhesion positive regulation of CD4-positive, alpha-beta T cell activation cell adhesion cell-cell adhesion alpha-beta T cell activation involved in immune response positive regulation of hemopoiesis CD4-positive, alpha-beta T cell activation lymphocyte activation involved in immune response regulation of lymphocyte differentiation regulation of multicellular organismal development positive regulation of cell adhesion regulation of regulatory T cell differentiation regulation of T cell activation T cell differentiation involved in immune response CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation regulation of hemopoiesis positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation positive regulation of killing of cells of another organism regulation of killing of cells of another organism disruption of cell in another organism regulation of cell killing positive regulation of cell killing disruption of anatomical structure in another organism modulation of process of another organism killing of cells of another organism cell killing positive regulation of nervous system development regulation of neurogenesis regulation of nervous system development positive regulation of neurogenesis interleukin-17 production negative regulation of interleukin-17 production negative regulation of cytokine production negative regulation of gene expression regulation of interleukin-17 production negative regulation of multicellular organismal process positive regulation of cell population proliferation positive regulation of B cell proliferation leukocyte proliferation regulation of B cell proliferation lymphocyte proliferation regulation of B cell activation positive regulation of mononuclear cell proliferation regulation of lymphocyte proliferation regulation of leukocyte proliferation B cell activation positive regulation of lymphocyte proliferation B cell proliferation positive regulation of B cell activation mononuclear cell proliferation positive regulation of leukocyte proliferation regulation of mononuclear cell proliferation catabolic process positive regulation of membrane protein ectodomain proteolysis macromolecule catabolic process cellular catabolic process regulation of proteolysis proteolysis membrane protein proteolysis membrane protein ectodomain proteolysis organonitrogen compound catabolic process regulation of membrane protein ectodomain proteolysis regulation of catabolic process protein catabolic process positive regulation of protein catabolic process positive regulation of catabolic process positive regulation of proteolysis regulation of cellular catabolic process positive regulation of cellular catabolic process organic substance catabolic process regulation of protein catabolic process defense response to virus response to virus transcription by RNA polymerase II regulation of transcription by RNA polymerase II positive regulation of nucleobase-containing compound metabolic process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of RNA biosynthetic process positive regulation of autophagy autophagy regulation of autophagy process utilizing autophagic mechanism leukocyte activation involved in inflammatory response microglial cell activation regulation of peptidyl-serine phosphorylation regulation of signal transduction regulation of receptor signaling pathway via JAK-STAT positive regulation of peptidyl-serine phosphorylation of STAT protein serine phosphorylation of STAT protein regulation of receptor signaling pathway via STAT regulation of peptidyl-serine phosphorylation of STAT protein peptidyl-serine modification peptidyl-serine phosphorylation positive regulation of peptidyl-serine phosphorylation positive regulation of locomotion regulation of cell motility positive regulation of cell migration positive regulation of epithelial cell migration tissue migration ameboidal-type cell migration positive regulation of cell motility regulation of cell migration cell migration epithelial cell migration cell motility regulation of epithelial cell migration locomotion epithelium migration regulation of locomotion positive regulation of osteoclast differentiation regulation of osteoclast differentiation osteoclast differentiation regulation of myeloid cell differentiation regulation of myeloid leukocyte differentiation positive regulation of myeloid leukocyte differentiation positive regulation of myeloid cell differentiation positive regulation of protein deacetylation macromolecule deacylation protein deacetylation regulation of protein deacetylation protein deacylation	extracellular region extracellular space cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR002069	Interferon gamma	Family
A, B	IPR009079	Four-helical cytokine-like, core	Homologous Superfamily

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.