Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyRuBisCo C-terminal domain8043704 3000552 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035457 3001258 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRuBisCO large subunit small (N-terminal) domain8035457 3001258 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRuBisCo C-terminal domain8043704 3000552 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
ARuBisCO_large_Ne1rbaA1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
ARuBisCO_largee1rbaA2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)
BRuBisCO_large_Ne1rbaB1 A: a+b two layersX: Alpha-beta plaitsH: RuBisCO, large subunit, small (N-terminal) domain (From Topology)T: RuBisCO, large subunit, small (N-terminal) domainF: RuBisCO_large_NECOD (1.6)
BRuBisCO_largee1rbaB2 A: a/b barrelsX: TIM beta/alpha-barrelH: TIM barrels (From Topology)T: TIM barrelsF: RuBisCO_largeECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF02788Ribulose bisphosphate carboxylase large chain, N-terminal domain (RuBisCO_large_N)Ribulose bisphosphate carboxylase large chain, N-terminal domainThe N-terminal domain of RuBisCO large chain adopts a ferredoxin-like fold.Domain
A, B
PF00016Ribulose bisphosphate carboxylase large chain, catalytic domain (RuBisCO_large)Ribulose bisphosphate carboxylase large chain, catalytic domainThe C-terminal domain of RuBisCO large chain is the catalytic domain adopting a TIM barrel fold.Domain

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
ribulose-bisphosphate carboxylase (type II)  M-CSA #797

Ribulose-bisphosphate carboxylase/oxygenase (RuBisCO) is the enzyme responsible for the initial step of carbon fixation during photosynthesis. RuBisCO carboxylates one molecule of ribulose-bisphosphate (RuBP), yielding two molecules of 3-phosphoglycerate(PGA). The latter is subsequently used partly to regenerate RuBP in the Calvin cycle and partly to build up sugar compounds. RuBisCO also acts as an oxygenase with RuBP as substrate. The oxygenation of RuBP initiates photorespiration, a pathway in which energy initially accumulated through the light reactions is lost as heat, with no apparent benefit for the plant. In higher plants and the majority of photosynthetic microorganisms, RuBP-carboxylase is composed of eight large and eight small subunits, forming a hexadecameric structure, L8S8. In contrast, in some photosynthetic bacteria, RuBisCO is a dimer of only large subunits.

Defined by 8 residues: LYS:A-166LYS:A-191ASN:A-192ASN:A-193GLU:A-194HIS:A-287HIS:A-321LYS:A-329
Some residues are not modelled and lack atomic coordinates. Visualization is not available.
Some residues are not modelled and lack atomic coordinates. Structure Motif searching is not available.
EC: 4.1.1.39 (PDB Primary Data)