CRYSTAL STRUCTURE OF PROPHYTEPSIN, A ZYMOGEN OF A BARLEY VACUOLAR ASPARTIC PROTEINASE.
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d1qdma1 | All alpha proteins | Saposin-like | Saposin | Swaposin | (Pro)phytepsin | (Hordeum vulgare ) [TaxId: 4513 ], | SCOPe (2.08) |
| A | d1qdma2 | All beta proteins | Acid proteases | Acid proteases | Pepsin-like | Plant acid proteinase, phytepsin | (Hordeum vulgare ) [TaxId: 4513 ], | SCOPe (2.08) |
| C | d1qdmc1 | All alpha proteins | Saposin-like | Saposin | Swaposin | (Pro)phytepsin | (Hordeum vulgare ) [TaxId: 4513 ], | SCOPe (2.08) |
| C | d1qdmc2 | All beta proteins | Acid proteases | Acid proteases | Pepsin-like | Plant acid proteinase, phytepsin | (Hordeum vulgare ) [TaxId: 4513 ], | SCOPe (2.08) |
| B | d1qdmb1 | All alpha proteins | Saposin-like | Saposin | Swaposin | (Pro)phytepsin | (Hordeum vulgare ) [TaxId: 4513 ], | SCOPe (2.08) |
| B | d1qdmb2 | All beta proteins | Acid proteases | Acid proteases | Pepsin-like | Plant acid proteinase, phytepsin | (Hordeum vulgare ) [TaxId: 4513 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2 Family | Swaposin | 8025399 | 4001057 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | Pepsin-like | 8030092 | 4002301 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Saposin | 8037778 | 3000601 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Acid proteases | 8042471 | 3001059 | SCOP2 (2022-06-29) |
| C | SCOP2B Superfamily | Acid proteases | 8042471 | 3001059 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Acid proteases | 8042471 | 3001059 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Acid proteases | 8042471 | 3001059 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Acid proteases | 8042471 | 3001059 | SCOP2B (2022-06-29) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 2.40.70.10 | Mainly Beta | Beta Barrel | Cathepsin D, subunit A | domain 1 | CATH (4.3.0) |
| A | 1.10.225.10 | Mainly Alpha | Orthogonal Bundle | NK-Lysin | Saposin-like | CATH (4.3.0) |
| C | 2.40.70.10 | Mainly Beta | Beta Barrel | Cathepsin D, subunit A | domain 1 | CATH (4.3.0) |
| C | 1.10.225.10 | Mainly Alpha | Orthogonal Bundle | NK-Lysin | Saposin-like | CATH (4.3.0) |
| B | 2.40.70.10 | Mainly Beta | Beta Barrel | Cathepsin D, subunit A | domain 1 | CATH (4.3.0) |
| B | 1.10.225.10 | Mainly Alpha | Orthogonal Bundle | NK-Lysin | Saposin-like | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| PROPHYTEPSIN |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR033869 | Phytepsin | Domain | |
| IPR011001 | Saposin-like | Homologous Superfamily | |
| IPR007856 | Saposin-like type B, region 1 | Domain | |
| IPR008139 | Saposin B type domain | Domain | |
| IPR001461 | Aspartic peptidase A1 | Family | |
| IPR033121 | Peptidase family A1 domain | Domain | |
| IPR008138 | Saposin B type, region 2 | Domain | |
| IPR021109 | Aspartic peptidase domain superfamily | Homologous Superfamily | |
| IPR001969 | Aspartic peptidase, active site | Active Site |
Membrane Protein Annotation: OPM OPM Database Homepage
| Chains | External Link | Type | Class | Superfamily | Family |
|---|---|---|---|---|---|
| OPM | Monotopic/peripheral | All beta monotopic/peripheral | Peptidase clan AA | Eukaryotic aspartyl protease |
