1Q56 | pdb_00001q56

NMR structure of the B0 isoform of the agrin G3 domain in its Ca2+ bound state

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1q56a1	All beta proteins	Concanavalin A-like lectins/glucanases	Concanavalin A-like lectins/glucanases	Laminin G-like module	Agrin	chicken (Gallus gallus ) [TaxId: 9031 ],	SCOPe (2.08)
A	d1q56a2	Artifacts	Tags	Tags	Tags	N-terminal Tags	chicken (Gallus gallus ) [TaxId: 9031 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Laminin G-like module	8027362	4002689	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Concanavalin A-like lectins/glucanases	8039741	3000120	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Laminin_G_1	e1q56A1	A: beta sandwiches	X: jelly-roll	H: Concanavalin A-like	T: Concanavalin A-like lectins/glucanases	F: Laminin_G_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.60.120.200	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00054	Laminin G domain (Laminin_G_1)	Laminin G domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Agrin	glycosaminoglycan binding chondroitin sulfate binding binding carbohydrate derivative binding sulfur compound binding neurotransmitter receptor regulator activity acetylcholine receptor regulator activity molecular function regulator activity signaling receptor regulator activity extracellular matrix binding protein binding laminin binding heparan sulfate proteoglycan binding proteoglycan binding glycosaminoglycan binding chondroitin sulfate binding binding carbohydrate derivative binding sulfur compound binding neurotransmitter receptor regulator activity acetylcholine receptor regulator activity molecular function regulator activity signaling receptor regulator activity extracellular matrix binding protein binding laminin binding heparan sulfate proteoglycan binding proteoglycan binding sialic acid binding organic acid binding ion binding anion binding carboxylic acid binding small molecule binding cation binding calcium ion binding metal ion binding molecular transducer activity signaling receptor activity dystroglycan binding protein tyrosine kinase activator activity enzyme regulator activity transmembrane receptor protein tyrosine kinase activator activity molecular function activator activity protein kinase regulator activity signaling receptor activator activity kinase activator activity enzyme activator activity protein kinase activator activity kinase regulator activity laminin-1 binding heparin binding	developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development cellular component organization organelle organization actin cytoskeleton organization actin filament-based process developmental process multicellular organism development multicellular organismal process head development central nervous system development anatomical structure development animal organ development brain development nervous system development system development cellular component organization organelle organization actin cytoskeleton organization actin filament-based process cellular process cellular component organization or biogenesis cytoskeleton organization regulation of neuron projection development regulation of cellular component organization regulation of cellular process cellular developmental process cell projection organization negative regulation of biological process cell development neuron projection development neurogenesis neuron differentiation cell differentiation negative regulation of cellular process negative regulation of cell projection organization regulation of biological process plasma membrane bounded cell projection organization negative regulation of cellular component organization regulation of cell projection organization biological regulation negative regulation of neuron projection development generation of neurons neuron development regulation of plasma membrane bounded cell projection organization cell adhesion cell-cell adhesion neuron cell-cell adhesion localization cellular localization receptor clustering macromolecule localization intracellular protein localization localization within membrane protein localization to membrane positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process membrane organization postsynapse organization skeletal muscle acetylcholine-gated channel clustering cell junction organization neuromuscular junction development synapse organization postsynaptic membrane organization positive regulation of molecular function regulation of molecular function positive regulation of hydrolase activity regulation of catalytic activity regulation of hydrolase activity positive regulation of catalytic activity regulation of GTPase activity positive regulation of GTPase activity cellular component biogenesis filopodium assembly cellular component assembly plasma membrane bounded cell projection assembly cell projection assembly positive regulation of cellular component organization regulation of filopodium assembly positive regulation of cell projection organization positive regulation of filopodium assembly positive regulation of cellular component biogenesis regulation of cell projection assembly regulation of cellular component biogenesis regulation of plasma membrane bounded cell projection assembly positive regulation of plasma membrane bounded cell projection assembly positive regulation of neuromuscular junction development positive regulation of nervous system development regulation of growth developmental growth positive regulation of developmental process regulation of synaptic assembly at neuromuscular junction regulation of synapse structure or activity regulation of biological quality regulation of neuromuscular junction development positive regulation of developmental growth positive regulation of synaptic assembly at neuromuscular junction regulation of cell junction assembly positive regulation of multicellular organismal process synapse assembly positive regulation of synapse assembly regulation of developmental process regulation of nervous system development cell junction assembly regulation of multicellular organismal process regulation of synapse assembly regulation of multicellular organismal development regulation of developmental growth growth regulation of synapse organization positive regulation of cell junction assembly positive regulation of growth synaptic assembly at neuromuscular junction	basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure synapse cell junction glutamatergic synapse neuromuscular junction axon cell projection neuron projection plasma membrane bounded cell projection extracellular region basement membrane cell periphery extracellular matrix cellular anatomical structure external encapsulating structure synapse cell junction glutamatergic synapse neuromuscular junction axon cell projection neuron projection plasma membrane bounded cell projection extracellular region extracellular space plasma membrane membrane membrane microdomain membrane raft photoreceptor ribbon synapse ribbon synapse basal part of cell synapse-associated extracellular matrix extracellular matrix of synaptic cleft specialized extracellular matrix

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR050372	Neurexin-related cell adhesion and synaptic protein	Family
A	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A	IPR002049	Laminin-type EGF domain	Domain
A	IPR004850	NtA (N-terminal agrin) domain	Domain
A	IPR003884	Factor I / membrane attack complex	Domain
A	IPR003645	Follistatin-like, N-terminal	Domain
A	IPR001881	EGF-like calcium-binding domain	Domain
A	IPR036364	SEA domain superfamily	Homologous Superfamily
A	IPR000082	SEA domain	Domain
A	IPR036058	Kazal domain superfamily	Homologous Superfamily
A	IPR002350	Kazal domain	Domain
A	IPR000742	EGF-like domain	Domain
A	IPR001791	Laminin G domain	Domain
A	IPR008993	Tissue inhibitor of metalloproteinases-like, OB-fold	Homologous Superfamily
A	IPR000152	EGF-type aspartate/asparagine hydroxylation site	PTM

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.