1Q2V | pdb_00001q2v

Crystal structure of the chaperonin from Thermococcus strain KS-1 (nucleotide-free form)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1q2vd1	All alpha proteins	GroEL equatorial domain-like	GroEL equatorial domain-like	Group II chaperonin (CCT, TRIC), ATPase domain	Thermosome, E domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
D	d1q2vd2	Alpha and beta proteins (a/b)	The 'swivelling' beta/beta/alpha domain	GroEL apical domain-like	Group II chaperonin (CCT, TRIC), apical domain	Thermosome, A-domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
D	d1q2vd3	Alpha and beta proteins (a+b)	GroEL-intermediate domain like	GroEL-intermediate domain like	Group II chaperonin (CCT, TRIC), intermediate domain	Thermosome, I domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
C	d1q2vc1	All alpha proteins	GroEL equatorial domain-like	GroEL equatorial domain-like	Group II chaperonin (CCT, TRIC), ATPase domain	Thermosome, E domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
C	d1q2vc2	Alpha and beta proteins (a/b)	The 'swivelling' beta/beta/alpha domain	GroEL apical domain-like	Group II chaperonin (CCT, TRIC), apical domain	Thermosome, A-domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
C	d1q2vc3	Alpha and beta proteins (a+b)	GroEL-intermediate domain like	GroEL-intermediate domain like	Group II chaperonin (CCT, TRIC), intermediate domain	Thermosome, I domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
B	d1q2vb1	All alpha proteins	GroEL equatorial domain-like	GroEL equatorial domain-like	Group II chaperonin (CCT, TRIC), ATPase domain	Thermosome, E domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
B	d1q2vb2	Alpha and beta proteins (a/b)	The 'swivelling' beta/beta/alpha domain	GroEL apical domain-like	Group II chaperonin (CCT, TRIC), apical domain	Thermosome, A-domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
B	d1q2vb3	Alpha and beta proteins (a+b)	GroEL-intermediate domain like	GroEL-intermediate domain like	Group II chaperonin (CCT, TRIC), intermediate domain	Thermosome, I domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
A	d1q2va1	All alpha proteins	GroEL equatorial domain-like	GroEL equatorial domain-like	Group II chaperonin (CCT, TRIC), ATPase domain	Thermosome, E domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
A	d1q2va2	Alpha and beta proteins (a/b)	The 'swivelling' beta/beta/alpha domain	GroEL apical domain-like	Group II chaperonin (CCT, TRIC), apical domain	Thermosome, A-domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)
A	d1q2va3	Alpha and beta proteins (a+b)	GroEL-intermediate domain like	GroEL-intermediate domain like	Group II chaperonin (CCT, TRIC), intermediate domain	Thermosome, I domain	(Thermococcus sp. JCM 11816 ) [TaxId: 1295125 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	GroEL equatorial domain-like	8039621	3001651	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GroEL-intermediate domain like	8039627	3001087	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GroEL apical domain-like	8039624	3000963	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GroEL equatorial domain-like	8039621	3001651	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GroEL-intermediate domain like	8039627	3001087	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GroEL equatorial domain-like	8039621	3001651	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GroEL equatorial domain-like	8039621	3001651	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GroEL-intermediate domain like	8039627	3001087	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GroEL apical domain-like	8039624	3000963	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GroEL-intermediate domain like	8039627	3001087	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GroEL equatorial domain-like	8039621	3001651	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GroEL apical domain-like	8039624	3000963	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GroEL-intermediate domain like	8039627	3001087	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GroEL-intermediate domain like	8039627	3001087	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GroEL equatorial domain-like	8039621	3001651	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GroEL-intermediate domain like	8039627	3001087	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GroEL apical domain-like	8039624	3000963	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GroEL equatorial domain-like	8039621	3001651	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GroEL equatorial domain-like	8039621	3001651	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GroEL-intermediate domain like	8039627	3001087	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	e1q2vD1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: Cation_efflux	F:	ECOD (20:10:01)
D	e1q2vD2	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: DUF3197	F:	ECOD (20:10:01)
D	e1q2vD3	A: HTH	X: HTH	H: winged helix domain	T: EF-hand_1, EF-hand_7	F:	ECOD (20:10:01)
C	e1q2vC1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: Cation_efflux	F:	ECOD (20:10:01)
C	e1q2vC2	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: DUF3197	F:	ECOD (20:10:01)
C	e1q2vC3	A: HTH	X: HTH	H: winged helix domain	T: EF-hand_1, EF-hand_7	F:	ECOD (20:10:01)
B	e1q2vB1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: Cation_efflux	F:	ECOD (20:10:01)
B	e1q2vB2	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: DUF3197	F:	ECOD (20:10:01)
B	e1q2vB3	A: HTH	X: HTH	H: winged helix domain	T: EF-hand_1, EF-hand_7	F:	ECOD (20:10:01)
A	e1q2vA1	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: p53 tetramerization domain	H: p53 tetramerization domain	T: Cation_efflux	F:	ECOD (20:10:01)
A	e1q2vA2	A: C-terminal subdomain in Lon-related proteases catalytic domains	X: C-terminal subdomain in Lon-related proteases catalytic domains	H: C-terminal subdomain in Lon-related proteases catalytic domains	T: DUF3197	F:	ECOD (20:10:01)
A	e1q2vA3	A: HTH	X: HTH	H: winged helix domain	T: EF-hand_1, EF-hand_7	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
D	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
D	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
C	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
C	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
C	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
B	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
B	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
B	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)
A	1.10.560.10	Mainly Alpha	Orthogonal Bundle	GROEL	domain 1	CATH (4.3.0)
A	3.30.260.10	Alpha Beta	2-Layer Sandwich	GROEL	domain 2	CATH (4.3.0)
A	3.50.7.10	Alpha Beta	3-Layer(bba) Sandwich	GroEL	GroEL	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Thermosome alpha subunit	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding unfolded protein binding protein binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity ATP-dependent protein folding chaperone protein folding chaperone	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR027413	GroEL-like equatorial domain superfamily	Homologous Superfamily
A, B, C, D	IPR053374	TCP-1_chaperonin	Unknown
A, B, C, D	IPR027410	TCP-1-like chaperonin intermediate domain superfamily	Homologous Superfamily
A, B, C, D	IPR054827	TCP-1 chaperonin-like	Family
A, B, C, D	IPR012714	Chaperonin/Thermosome	Family
A, B, C, D	IPR017998	T-complex protein 1	Family
A, B, C, D	IPR002194	Chaperonin TCP-1, conserved site	Conserved Site
A, B, C, D	IPR027409	GroEL-like apical domain superfamily	Homologous Superfamily
A, B, C, D	IPR002423	Chaperonin Cpn60/GroEL/TCP-1 family	Family