1PZ3 | pdb_00001pz3

Crystal structure of a family 51 (GH51) alpha-L-arabinofuranosidase from Geobacillus stearothermophilus T6


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B SuperfamilyGlycosyl hydrolase domain-like 8040030 3001528 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyGlycosyl hydrolase domain-like 8040030 3001528 SCOP2B (2022-06-29)
ASCOP2B Superfamily(Trans)glycosidases 8040032 3000313 SCOP2B (2022-06-29)
BSCOP2B Superfamily(Trans)glycosidases 8040032 3000313 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8040030 3001528 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyGlycosyl hydrolase domain-like 8040030 3001528 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ae1pz3A1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Ldl_recept_bF:ECOD (20:10:01)
Ae1pz3A2 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: EpimeraseF:ECOD (20:10:01)
Be1pz3B1 A: Cloacin translocation domainX: Cloacin translocation domainH: Cloacin translocation domainT: Ldl_recept_bF:ECOD (20:10:01)
Be1pz3B2 A: C-terminal subdomain in Lon-related proteases catalytic domainsX: C-terminal subdomain in Lon-related proteases catalytic domainsH: C-terminal subdomain in Lon-related proteases catalytic domainsT: EpimeraseF:ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)
A3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)
B2.60.40.1180 Mainly Beta Sandwich Immunoglobulin-like Golgi alpha-mannosidase IICATH (4.3.0)
B3.20.20.80 Alpha Beta Alpha-Beta Barrel TIM Barrel GlycosidasesCATH (4.3.0)

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
alpha-N-arabinofuranosidase  M-CSA #667

Involved in the degradation of arabinan and is a key enzyme in the complete degradation of the plant cell wall. Catalyses the cleavage of terminal alpha-(1->5)-arabinofuranosyl bonds in different hemicellulosic homopolysaccharides (branched and debranched arabinans). It acts preferentially on aryl-alpha-L-arabinofuranosides, and is much less effective on aryl-beta-D-xylopyranosides. It is a member of the glycosyl hydrolase 51 family.

Defined by 2 residues: GLU:A-175GLU:A-294
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