1PSO

The crystal structure of human pepsin and its complex with pepstatin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A [auth E]	d1psoe_	All beta proteins	Acid proteases	Acid proteases	Pepsin-like	Pepsin(ogen)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth E]	SCOP2 Family	Pepsin-like	8030100	4002301	SCOP2 (2022-06-29)
A [auth E]	SCOP2 Superfamily	Acid proteases	8042479	3001059	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth E]	Asp_C,Asp_N	e1psoE2	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_C,Asp_N	ECOD (1.6)
A [auth E]	Asp_N	e1psoE3	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Asp_N	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth E]	2.40.70.10	Mainly Beta	Beta Barrel	Cathepsin D, subunit A	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E]	PF00026	Eukaryotic aspartyl protease (Asp)	Eukaryotic aspartyl protease	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E]	PEPSIN 3A	aspartic-type peptidase activity peptidase activity catalytic activity, acting on a protein hydrolase activity aspartic-type endopeptidase activity catalytic activity endopeptidase activity	organic substance metabolic process organonitrogen compound metabolic process proteolysis nitrogen compound metabolic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process multicellular organismal process digestion	membrane-bounded organelle multivesicular body lumen intracellular anatomical structure endosome intracellular vesicle membrane-enclosed lumen cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen intracellular organelle cytoplasmic vesicle organelle lumen organelle membrane-bounded organelle multivesicular body lumen intracellular anatomical structure endosome intracellular vesicle membrane-enclosed lumen cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen intracellular organelle cytoplasmic vesicle organelle lumen organelle late endosome cytoplasm late endosome lumen endosome lumen vesicle multivesicular body extracellular exosome extracellular vesicle extracellular organelle extracellular region extracellular space extracellular membrane-bounded organelle
B [auth I]	PEPSTATIN	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E]	IPR012848	Aspartic peptidase, N-terminal	Domain
A [auth E]	IPR034162	Pepsin catalytic domain	Domain
A [auth E]	IPR033121	Peptidase family A1 domain	Domain
A [auth E]	IPR001461	Aspartic peptidase A1 family	Family
A [auth E]	IPR021109	Aspartic peptidase domain superfamily	Homologous Superfamily
A [auth E]	IPR001969	Aspartic peptidase, active site	Active Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth E]	Pharos: P0DJD7	rheumatoid arthritis

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.