Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyAmine oxidase-like 8001437 4000128 SCOP2 (2022-06-29)
ASCOP2 FamilyGcvT aminomethyltransferase-like 8001438 4000062 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyFlavoreductase-like 8017496 3000055 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyFolate-binding domain-like 8001552 3000025 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyAminomethyltransferase beta-barrel domain-like 8056079 3000024 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AGCV_T_Ce1pj5A1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: Aminomethyltransferase beta-barrel domainF: GCV_T_CECOD (1.6)
AKOG2844e1pj5A3 A: a+b two layersX: FAD-linked reductases, C-terminal domain-likeH: FAD-linked reductases-C (From Topology)T: FAD-linked reductases-CF: KOG2844ECOD (1.6)
AGCV_T_Ne1pj5A6 A: a+b two layersX: Alpha-beta plaitsH: Aminomethyltransferase folate-binding domain (From Topology)T: Aminomethyltransferase folate-binding domainF: GCV_T_NECOD (1.6)
AGCV_T_N1e1pj5A5 A: a+b two layersX: Alpha-beta plaitsH: Aminomethyltransferase folate-binding domain (From Topology)T: Aminomethyltransferase folate-binding domainF: GCV_T_N1ECOD (1.6)
ADAO_1ste1pj5A4 A: a/b three-layered sandwichesX: Rossmann-likeH: Rossmann-relatedT: FAD/NAD(P)-binding domainF: DAO_1stECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF16350FAD dependent oxidoreductase central domain (FAO_M)FAD dependent oxidoreductase central domain- Family
PF01571Aminomethyltransferase folate-binding domain (GCV_T)Aminomethyltransferase folate-binding domainThis is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl tran ...This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase.
Domain
PF01266FAD dependent oxidoreductase (DAO)FAD dependent oxidoreductaseThis family includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase EC:1.1.99.5, Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.Domain
PF08669Glycine cleavage T-protein C-terminal barrel domain (GCV_T_C)Glycine cleavage T-protein C-terminal barrel domainThis is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl tran ...This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase.
Domain

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

ChainsEnzyme NameDescriptionCatalytic Residues
dimethylglycine oxidase (tetrahydrofolate utilising)  M-CSA #879

Catalyses the oxidative demethylation of N,N-dimethylglycine to yield sarcosine, 5,10-methylenetetrahydrofolate and hydrogen peroxide. The oxidation of dimethylglycine is coupled to the synthesis of 5,10-methylenetetrahydrofolate through an unusual substrate channelling mechanism. This channelling occurs by non-biased diffusion of the iminium intermediate through a large solvent cavity connecting active site 1 (N-terminus) and active site 2 (C-terminus). The synthesis of 5,10-methylenetetrahydrofolate (at active site 2) prevents the accumulation of formaldehyde (not shown), formed by hydrolysis of the iminium intermediate product (at active site 1).

Defined by 3 residues: HIS:A-225TYR:A-259ASP:A-552
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Explore in 3DM-CSA Motif Definition
Extent of motif is too large to support Structure Motif searching.
EC: 1.5.3.10 (PDB Primary Data)