1P9G | pdb_00001p9g

Crystal structure of a novel antifungal protein distinct with five disulfide bridges from Ecommia ulmoides Oliver at atomic resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1p9ga_	Small proteins	Knottins (small inhibitors, toxins, lectins)	Plant lectins/antimicrobial peptides	Hevein-like agglutinin (lectin) domain	Antifungal peptide 2	(Eucommia ulmoides ) [TaxId: 4392 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Hevein-like agglutinin (lectin) domain	8025696	4003041	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Plant lectins/antimicrobial peptides	8038075	3000195	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Chitin_bind_1	e1p9gA1	A: few secondary structure elements	X: omega toxin-like	H: omega toxin-related	T: Plant lectins/antimicrobial peptides	F: Chitin_bind_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.60.10	Alpha Beta	2-Layer Sandwich	Wheat Germ Agglutinin (Isolectin 2)	domain 1	CATH (4.2.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	EAFP 2	chitin binding binding carbohydrate derivative binding	defense response to fungus biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to stress response to external stimulus response to fungus response to external biotic stimulus response to biotic stimulus cellular process disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism defense response to fungus biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response response to stress response to external stimulus response to fungus response to external biotic stimulus response to biotic stimulus cellular process disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001002	Chitin-binding, type 1	Domain
A	IPR018371	Chitin-binding, type 1, conserved site	Conserved Site
A	IPR036861	Endochitinase-like superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A	PCA	Parent Component: GLN RESID: AA0031 PSI-MOD : 2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.