1P90 | pdb_00001p90

The Three-dimensional Structure of the Core Domain of NafY from Azotobacter vinelandii determined at 1.8 resolution

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1p90a_	Alpha and beta proteins (a/b)	Ribonuclease H-like motif	Nitrogenase accessory factor-like	Nitrogenase accessory factor	NafY core domain	(Azotobacter vinelandii ) [TaxId: 354 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Nitrogenase accessory factor	8026056	4001127	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Nitrogenase accessory factor-like	8038435	3000583	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Nitro_FeMo-Co	e1p90A1	A: mixed a+b and a/b	X: Ribonuclease H-like	H: Nitrogenase accessory factor-like (From Topology)	T: Nitrogenase accessory factor-like	F: Nitro_FeMo-Co	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.420.130	Alpha Beta	2-Layer Sandwich	Nucleotidyltransferase	domain 5	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	hypothetical protein	binding metal cluster binding small molecule binding	nitrogen cycle metabolic process metabolic process cellular process nitrogen fixation	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR034169	NifX-like domain	Domain
A	IPR013480	Nitrogen fixation protein NifX	Family
A	IPR031763	Dinitrogenase iron-molybdenum cofactor, N-terminal	Domain
A	IPR038127	Dinitrogenase iron-molybdenum cofactor, N-terminal domain superfamily	Homologous Superfamily
A	IPR003731	Dinitrogenase iron-molybdenum cofactor biosynthesis	Domain
A	IPR036105	Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily	Homologous Superfamily
A	IPR051840	NifX/NifY domain-containing protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.