Crystal structure of superoxide dismutase from Pyrobaculum aerophilum
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2 Family | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8025932 | 4000630 | SCOP2 (2022-06-29) |
| A | SCOP2 Family | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8025934 | 4001146 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2 (2022-06-29) |
| B | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| C | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| N | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| O | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| P | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| Q | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| Q | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| R | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| R | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| S | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| T | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| U | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| V | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| W | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
| X | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), N-terminal domain | 8038311 | 3000794 | SCOP2B (2022-06-29) |
| X | SCOP2B Superfamily | Fe, Mn superoxide dismutase (SOD), C-terminal domain | 8038313 | 3000916 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Sod_Fe_C | e1p7gA2 | A: a+b three layers | X: Fe,Mn superoxide dismutase (SOD)-C | H: Fe,Mn superoxide dismutase (SOD)-C | T: Fe,Mn superoxide dismutase (SOD)-C | F: Sod_Fe_C | ECOD (v294.1) |
| A | Seryl_tRNA_N | e1p7gA1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| B | Seryl_tRNA_N | e1p7gB1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| B | NTP_transf_2, PAP_NTPase | e1p7gB2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| C | Seryl_tRNA_N | e1p7gC1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| C | NTP_transf_2, PAP_NTPase | e1p7gC2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| D | Seryl_tRNA_N | e1p7gD1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| D | NTP_transf_2, PAP_NTPase | e1p7gD2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| E | Seryl_tRNA_N | e1p7gE1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| E | NTP_transf_2, PAP_NTPase | e1p7gE2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| F | Seryl_tRNA_N | e1p7gF1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| F | NTP_transf_2, PAP_NTPase | e1p7gF2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| G | Seryl_tRNA_N | e1p7gG1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| G | NTP_transf_2, PAP_NTPase | e1p7gG2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| H | Seryl_tRNA_N | e1p7gH1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| H | NTP_transf_2, PAP_NTPase | e1p7gH2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| I | Seryl_tRNA_N | e1p7gI1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| I | NTP_transf_2, PAP_NTPase | e1p7gI2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| J | Seryl_tRNA_N | e1p7gJ1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| J | NTP_transf_2, PAP_NTPase | e1p7gJ2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| K | Seryl_tRNA_N | e1p7gK1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| K | NTP_transf_2, PAP_NTPase | e1p7gK2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| L | Seryl_tRNA_N | e1p7gL1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| L | NTP_transf_2, PAP_NTPase | e1p7gL2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| M | Seryl_tRNA_N | e1p7gM1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| M | NTP_transf_2, PAP_NTPase | e1p7gM2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| N | Seryl_tRNA_N | e1p7gN1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| N | NTP_transf_2, PAP_NTPase | e1p7gN2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| O | Seryl_tRNA_N | e1p7gO1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| O | NTP_transf_2, PAP_NTPase | e1p7gO2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| P | Seryl_tRNA_N | e1p7gP1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| P | NTP_transf_2, PAP_NTPase | e1p7gP2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| Q | Seryl_tRNA_N | e1p7gQ1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| Q | NTP_transf_2, PAP_NTPase | e1p7gQ2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| R | Seryl_tRNA_N | e1p7gR1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| R | NTP_transf_2, PAP_NTPase | e1p7gR2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| S | Seryl_tRNA_N | e1p7gS1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| S | NTP_transf_2, PAP_NTPase | e1p7gS2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| T | Seryl_tRNA_N | e1p7gT1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| T | NTP_transf_2, PAP_NTPase | e1p7gT2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| U | Seryl_tRNA_N | e1p7gU1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| U | NTP_transf_2, PAP_NTPase | e1p7gU2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| V | Seryl_tRNA_N | e1p7gV1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| V | NTP_transf_2, PAP_NTPase | e1p7gV2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| W | Seryl_tRNA_N | e1p7gW1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| W | NTP_transf_2, PAP_NTPase | e1p7gW2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
| X | Seryl_tRNA_N | e1p7gX1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: tRNA-binding arm | T: tRNA-binding arm | F: Seryl_tRNA_N | ECOD (v294.1) |
| X | NTP_transf_2, PAP_NTPase | e1p7gX2 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: NTP_transf_2, PAP_NTPase | ECOD (v294.1) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00081 | Iron/manganese superoxide dismutases, alpha-hairpin domain (Sod_Fe_N) | Iron/manganese superoxide dismutases, alpha-hairpin domain | superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplas ... | Domain | |
| PF02777 | Iron/manganese superoxide dismutases, C-terminal domain (Sod_Fe_C) | Iron/manganese superoxide dismutases, C-terminal domain | superoxide dismutases (SODs) catalyse the conversion of superoxide radicals to hydrogen peroxide and molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the Mn/Fe-binding family is one. In humans, there is a cytoplas ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Superoxide dismutase | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR036324 | Manganese/iron superoxide dismutase, N-terminal domain superfamily | Homologous Superfamily | |
| IPR001189 | Manganese/iron superoxide dismutase | Family | |
| IPR050265 | Iron/Manganese Superoxide Dismutase | Family | |
| IPR019833 | Manganese/iron superoxide dismutase, binding site | Binding Site | |
| IPR019832 | Manganese/iron superoxide dismutase, C-terminal | Domain | |
| IPR019831 | Manganese/iron superoxide dismutase, N-terminal | Domain | |
| IPR036314 | Manganese/iron superoxide dismutase, C-terminal domain superfamily | Homologous Superfamily |
