Crystal structure of the nucleocapsid protein of porcine reproductive and respiratory syndrome virus (PRRSV)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d1p65b_ | Alpha and beta proteins (a+b) | Nucleocapsid protein dimerization domain | Nucleocapsid protein dimerization domain | Arterivirus nucleocapsid protein | Arterivirus nucleocapsid protein | (Porcine reproductive and respiratory syndrome virus ) [TaxId: 28344 ], | SCOPe (2.08) |
| A | d1p65a_ | Alpha and beta proteins (a+b) | Nucleocapsid protein dimerization domain | Nucleocapsid protein dimerization domain | Arterivirus nucleocapsid protein | Arterivirus nucleocapsid protein | (Porcine reproductive and respiratory syndrome virus ) [TaxId: 28344 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | Nucleocapsid protein dimerization domain | 8038262 | 3001606 | SCOP2B (2022-06-29) |
| A | SCOP2 Family | Arterivirus nucleocapsid protein | 8025883 | 4001449 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Nucleocapsid protein dimerization domain | 8038262 | 3001606 | SCOP2 (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Tautomerase | e1p65B1 | A: alpha bundles | X: Repetitive alpha hairpins | H: ARM repeat | T: ARM repeat | F: Tautomerase | ECOD (develop294) |
| A | Arteri_nucleo | e1p65A1 | A: few secondary structure elements | X: Arterivirus nucleocapsid protein | H: Arterivirus nucleocapsid protein | T: Arterivirus nucleocapsid protein | F: Arteri_nucleo | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 6.10.140.90 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) | |
| A | 6.10.140.90 | Special | Helix non-globular | Helix Hairpins | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| nucleocapsid protein | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR002484 | Arterivirus nucleocapsid | Family | |
| IPR037179 | Nucleocapsid protein, C-terminal | Homologous Superfamily |
