1OP8 | pdb_00001op8

Crystal Structure of Human Granzyme A

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
F	d1op8f_	All beta proteins	Trypsin-like serine proteases	Trypsin-like serine proteases	Eukaryotic proteases	Granzyme A	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d1op8e_	All beta proteins	Trypsin-like serine proteases	Trypsin-like serine proteases	Eukaryotic proteases	Granzyme A	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d1op8d_	All beta proteins	Trypsin-like serine proteases	Trypsin-like serine proteases	Eukaryotic proteases	Granzyme A	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d1op8c_	All beta proteins	Trypsin-like serine proteases	Trypsin-like serine proteases	Eukaryotic proteases	Granzyme A	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d1op8b_	All beta proteins	Trypsin-like serine proteases	Trypsin-like serine proteases	Eukaryotic proteases	Granzyme A	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d1op8a_	All beta proteins	Trypsin-like serine proteases	Trypsin-like serine proteases	Eukaryotic proteases	Granzyme A	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Trypsin-like serine proteases	8034265	3000114	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Trypsin-like serine proteases	8034265	3000114	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Trypsin-like serine proteases	8034265	3000114	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Trypsin-like serine proteases	8034265	3000114	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Trypsin-like serine proteases	8034265	3000114	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Trypsin-like serine proteases	8034265	3000114	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	Peptidase_C4	e1op8F1	A: alpha bundles	X: Cloacin translocation domain	H: LigT-related	T: LigT-related	F: Peptidase_C4	ECOD (develop294)
E	Peptidase_C4	e1op8E1	A: alpha bundles	X: Cloacin translocation domain	H: LigT-related	T: LigT-related	F: Peptidase_C4	ECOD (develop294)
D	Peptidase_C4	e1op8D1	A: alpha bundles	X: Cloacin translocation domain	H: LigT-related	T: LigT-related	F: Peptidase_C4	ECOD (develop294)
C	Peptidase_C4	e1op8C1	A: alpha bundles	X: Cloacin translocation domain	H: LigT-related	T: LigT-related	F: Peptidase_C4	ECOD (develop294)
B	Peptidase_C4	e1op8B1	A: alpha bundles	X: Cloacin translocation domain	H: LigT-related	T: LigT-related	F: Peptidase_C4	ECOD (develop294)
A	Peptidase_C4	e1op8A1	A: alpha bundles	X: Cloacin translocation domain	H: LigT-related	T: LigT-related	F: Peptidase_C4	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	2.40.10.10	Mainly Beta	Beta Barrel	Thrombin, subunit H	Trypsin-like serine proteases	CATH (4.3.0)
E	2.40.10.10	Mainly Beta	Beta Barrel	Thrombin, subunit H	Trypsin-like serine proteases	CATH (4.3.0)
D	2.40.10.10	Mainly Beta	Beta Barrel	Thrombin, subunit H	Trypsin-like serine proteases	CATH (4.3.0)
C	2.40.10.10	Mainly Beta	Beta Barrel	Thrombin, subunit H	Trypsin-like serine proteases	CATH (4.3.0)
B	2.40.10.10	Mainly Beta	Beta Barrel	Thrombin, subunit H	Trypsin-like serine proteases	CATH (4.3.0)
A	2.40.10.10	Mainly Beta	Beta Barrel	Thrombin, subunit H	Trypsin-like serine proteases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00089	Trypsin (Trypsin)	Trypsin		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Granzyme A	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity	response to stimulus defense response response to stress pyroptotic cell death pyroptotic inflammatory response cytotoxic T cell pyroptotic cell death cellular process inflammatory response cell death programmed cell death immune response immune system process apoptotic process regulation of biological process response to stimulus defense response response to stress pyroptotic cell death pyroptotic inflammatory response cytotoxic T cell pyroptotic cell death cellular process inflammatory response cell death programmed cell death immune response immune system process apoptotic process regulation of biological process positive regulation of programmed cell death regulation of cellular process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death positive regulation of apoptotic process positive regulation of cellular process cellular response to stimulus signaling granzyme-mediated programmed cell death signaling pathway cell communication signal transduction regulation of molecular function regulation of catalytic activity negative regulation of oxidoreductase activity negative regulation of molecular function negative regulation of catalytic activity regulation of oxidoreductase activity biological process involved in interspecies interaction between organisms response to other organism response to bacterium response to external stimulus response to external biotic stimulus response to biotic stimulus disruption of cell in another organism disruption of anatomical structure in another organism killing of cells of another organism cell killing biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation regulation of DNA binding regulation of binding negative regulation of binding negative regulation of DNA binding	membrane-bounded organelle intracellular anatomical structure lytic vacuole cytolytic granule vacuole intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle cytoplasm lysosome cell periphery immunological synapse plasma membrane membrane-bounded organelle intracellular anatomical structure lytic vacuole cytolytic granule vacuole intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle cytoplasm lysosome cell periphery immunological synapse plasma membrane membrane extracellular region extracellular space nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR018114	Serine proteases, trypsin family, histidine active site	Active Site
A, B, C, D, E A, B, C, D, E, F	IPR043504	Peptidase_S1_PA_chymotrypsin	Unknown
A, B, C, D, E A, B, C, D, E, F	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR001314	Peptidase S1A, chymotrypsin family	Family
A, B, C, D, E A, B, C, D, E, F	IPR033116	Serine proteases, trypsin family, serine active site	Active Site
A, B, C, D, E A, B, C, D, E, F	IPR001254	Serine proteases, trypsin domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F	Pharos: P12544	Liver Cirrhosis, Experimental chronic kidney disease glioblastoma invasive ductal breast carcinoma lung cancer nasopharyngeal carcinoma psoriasis tuberculosis chronic obstructive pulmonary disease head and neck cancer lung carcinoma nephrosclerosis sarcoidosis cutaneous lupus erythematosus interstitial cystitis Liver Cirrhosis, Experimental chronic kidney disease glioblastoma invasive ductal breast carcinoma lung cancer nasopharyngeal carcinoma psoriasis tuberculosis chronic obstructive pulmonary disease head and neck cancer lung carcinoma nephrosclerosis sarcoidosis cutaneous lupus erythematosus interstitial cystitis lung adenocarcinoma malignant glioma ovarian cancer Sjogren syndrome

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.