1OOJ | pdb_00001ooj

Structural genomics of Caenorhabditis elegans : Calmodulin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1ooja_	All alpha proteins	EF Hand-like	EF-hand	Calmodulin-like	Calmodulin	(Caenorhabditis elegans ) [TaxId: 6239 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Calmodulin-like	8021814	4000924	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	EF-hand	8034194	3001983	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	EF-hand_1, EF-hand_7	e1oojA1	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: EF-hand_1, EF-hand_7	ECOD (v294.1)
A	Lyase_aromatic	e1oojA2	A: a/b three-layered sandwiches	X: UBC-like	H: UBC-like	T: Concanavalin A-like lectins/glucanases	F: Lyase_aromatic	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.238.10	Mainly Alpha	Orthogonal Bundle	Recoverin	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF13499	EF-hand domain pair (EF-hand_7)	EF-hand domain pair		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Calmodulin CMD-1	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding enzyme regulator activity molecular function regulator activity	establishment of organelle localization cellular localization sexual reproduction reproductive process microtubule cytoskeleton organization establishment of meiotic spindle localization spindle localization establishment or maintenance of cell polarity meiotic cell cycle process cellular component organization localization establishment of spindle localization establishment of spindle orientation organelle localization establishment of localization in cell establishment of organelle localization cellular localization sexual reproduction reproductive process microtubule cytoskeleton organization establishment of meiotic spindle localization spindle localization establishment or maintenance of cell polarity meiotic cell cycle process cellular component organization localization establishment of spindle localization establishment of spindle orientation organelle localization establishment of localization in cell cell cycle cellular component organization or biogenesis cell cycle process establishment of meiotic spindle orientation meiotic cell cycle establishment of localization establishment of cell polarity organelle organization cellular process microtubule-based process cytoskeleton organization regulation of localization regulation of biological process regulation of protein localization macromolecule localization biological regulation intracellular protein localization positive chemotaxis chemotaxis response to stimulus taxis response to chemical response to external stimulus locomotion regulation of cellular process regulation of apoptotic process apoptotic process regulation of programmed cell death cell death programmed cell death regulation of cell cycle regulation of biosynthetic process negative regulation of metabolic process negative regulation of biological process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of cellular process regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process negative regulation of macromolecule metabolic process developmental process multicellular organism development multicellular organismal process embryo development ending in birth or egg hatching anatomical structure development embryo development import into cell transport phagocytosis apoptotic cell clearance endocytosis vesicle-mediated transport cell migration cell motility	membrane-bounded organelle intracellular anatomical structure nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope organelle membrane phosphatase complex membrane-bounded organelle intracellular anatomical structure nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope organelle membrane phosphatase complex protein-containing complex catalytic complex calcineurin complex protein serine/threonine phosphatase complex intracellular protein-containing complex centrosome microtubule organizing center cytoskeleton membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cell periphery cytoplasm mitotic spindle spindle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR050230	Calmodulin/Myosin light chain/Troponin C-like	Family
A	IPR018247	EF-Hand 1, calcium-binding site	Binding Site
A	IPR002048	EF-hand domain	Domain
A	IPR011992	EF-hand domain pair	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.