1OKG | pdb_00001okg

3-mercaptopyruvate sulfurtransferase from Leishmania major

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation
Structure Motif: Primary M-CSA Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d1okga1	Alpha and beta proteins (a/b)	Rhodanese/Cell cycle control phosphatase	Rhodanese/Cell cycle control phosphatase	Multidomain sulfurtransferase (rhodanese)	3-mercaptopyruvate sulfurtransferase	(Leishmania major ) [TaxId: 5664 ],	SCOPe (2.08)
A	d1okga3	Alpha and beta proteins (a+b)	FKBP-like	FKBP-like	3-mercaptopyruvate sulfurtransferase, C-terminal domain	3-mercaptopyruvate sulfurtransferase, C-terminal domain	(Leishmania major ) [TaxId: 5664 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Multidomain sulfurtransferase (rhodanese)	8025197	4000452	SCOP2 (2022-06-29)
A	SCOP2 Family	Multidomain sulfurtransferase (rhodanese)	8025200	4000452	SCOP2 (2022-06-29)
A	SCOP2 Family	3-mercaptopyruvate sulfurtransferase, C-terminal domain	8025204	4001362	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Rhodanese/Cell cycle control phosphatase	8037576	3000320	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Rhodanese/Cell cycle control phosphatase	8037579	3000320	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Rotamase-like	8037583	3000622	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	FKBP_C	e1okgA1	A: a+b two layers	X: FKBP-like	H: FKBP-like	T: FKBP-like	F: FKBP_C	ECOD (v294.1)
A	Rhodanese	e1okgA2	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavoproteins/Phosphotyrosine protein phosphatases-like	T: Rhodanese/Cell cycle control phosphatase	F: Rhodanese	ECOD (v294.1)
A	Rhodanese	e1okgA3	A: a/b three-layered sandwiches	X: Flavodoxin-like	H: Flavoproteins/Phosphotyrosine protein phosphatases-like	T: Rhodanese/Cell cycle control phosphatase	F: Rhodanese	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.250.10	Alpha Beta	3-Layer(aba) Sandwich	Oxidized Rhodanese	domain 1	CATH (4.3.0)
A	3.30.1670.10	Alpha Beta	2-Layer Sandwich	3-mercaptopyruvate sulfurtransferase, domain 3	3-mercaptopyruvate sulfurtransferase, domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF09122	Domain of unknown function (DUF1930) (DUF1930)	Domain of unknown function (DUF1930)	Members of this family are found in 3-mercaptopyruvate sulfurtransferase, and have no known function. They adopt a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and be ...	Members of this family are found in 3-mercaptopyruvate sulfurtransferase, and have no known function. They adopt a structure consisting of a four-stranded antiparallel beta-sheet and an alpha-helix, arranged in a beta(2)-alpha-beta(2) fashion, and bearing a remarkable structural similarity to the FK506-binding protein class of peptidylprolyl cis/trans-isomerase [1].	Domain
A	PF00581	Rhodanese-like domain (Rhodanese)	Rhodanese-like domain	Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	POSSIBLE 3-MERCAPTOPYRUVATE SULFURTRANSFERASE	thiosulfate-cyanide sulfurtransferase activity sulfurtransferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity 3-mercaptopyruvate sulfurtransferase activity	metabolic process cellular process cyanide metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle intracellular organelle mitochondrion organelle intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR015206	3-mercaptopyruvate sulfurtransferase, C-terminal domain	Domain
A	IPR001763	Rhodanese-like domain	Domain
A	IPR045078	Sulfurtransferase TST/MPST-like	Family
A	IPR036873	Rhodanese-like domain superfamily	Homologous Superfamily
A	IPR038457	3-mercaptopyruvate sulfurtransferase, C-terminal domain superfamily	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A	CSR	Parent Component: CYS
A	CSS	Parent Component: CYS RESID: AA0269 PSI-MOD : L-cysteine persulfide MOD:00274
A	MSE	Parent Component: MET RESID: AA0269

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

Chains	Enzyme Name	Description	Catalytic Residues
A	3-mercaptopyruvate sulfurtransferase M-CSA #871	Sulfurtransferases (EC 2.8.1.1–5) catalyze the transfer of sulfane sulfur from a donor molecule to a thiophilic acceptor. These enzymes are widely distributed in plants, animals, and bacteria and have been implicated in a wide range of biological processes. The archetypal sulfurtransferase is rhodanese, a thiosulfate: cyanide sulfurtransferase (TST) able to catalyse the transfer of the thiosulfate sulfur to cyanide in vitro. The related 3-mercaptopyruvate sulfurtransferase (3-mercaptopyruvate:cyanide sulfurtransferase (MST)), first discovered in rat liver, catalyses reactions similar to those catalysed by rhodanese, but uses 3-mercaptopyruvate in preference to thiosulfate as the donor in the two-step reaction.	Defined by 4 residues: ASP:A-61HIS:A-75CYS:A-253SER:A-255 \| Explore in 3D: M-CSA Motif Definition Search M-CSA Motif EC: 2.8.1.2 (PDB Primary Data) Search M-CSA Motif + EC 2.8.1.2

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.