1OHF | pdb_00001ohf

The refined structure of Nudaurelia capensis omega virus

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
G [auth D]	d1ohfd_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Tetraviridae-like VP	Tetraomegavirus capsid protein	(Nudaurelia capensis omega virus ) [TaxId: 12541 ],	SCOPe (2.08)
E [auth C]	d1ohfc_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Tetraviridae-like VP	Tetraomegavirus capsid protein	(Nudaurelia capensis omega virus ) [TaxId: 12541 ],	SCOPe (2.08)
C [auth B]	d1ohfb_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Tetraviridae-like VP	Tetraomegavirus capsid protein	(Nudaurelia capensis omega virus ) [TaxId: 12541 ],	SCOPe (2.08)
A	d1ohfa_	All beta proteins	Nucleoplasmin-like/VP (viral coat and capsid proteins)	Positive stranded ssRNA viruses	Tetraviridae-like VP	Tetraomegavirus capsid protein	(Nudaurelia capensis omega virus ) [TaxId: 12541 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
G [auth D]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8037475	3000918	SCOP2B (2022-06-29)
E [auth C]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8037475	3000918	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	Positive stranded ssRNA viruses-like	8037475	3000918	SCOP2B (2022-06-29)
A	SCOP2 Family	Tetraviridae-like VP	8025096	4000809	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Positive stranded ssRNA viruses-like	8037475	3000918	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
G [auth D]	YadA_stalk	e1ohfD1	A: a/b three-layered sandwiches	X: SMI1/KNR4-like	H: SMI1/KNR4-like	T: SMI1/KNR4-like	F: YadA_stalk	ECOD (v294.1)
E [auth C]	Gtf3_C	e1ohfC2	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: Gtf3_C	ECOD (v294.1)
E [auth C]	Nrd1-Seb1_dom2	e1ohfC3	A: a/b three-layered sandwiches	X: CRISPR-associated protein Cse2	H: CRISPR-associated protein Cse2	T: CRISPR-associated protein Cse2	F: Nrd1-Seb1_dom2	ECOD (v294.1)
C [auth B]	DctP	e1ohfB1	A: a/b three-layered sandwiches	X: omega toxin-like	H: omega toxin-related	T: omega toxin-related	F: DctP	ECOD (v294.1)
A	Peptidase_A21	e1ohfA3	A: a/b three-layered sandwiches	X: Insertion domain in tetravirus coat protein	H: Thiamin diphosphate-binding fold (THDP-binding)	T: Thiamin diphosphate-binding fold (THDP-binding)	F: Peptidase_A21	ECOD (v294.1)
A	TPP_enzyme_C	e1ohfA2	A: a/b three-layered sandwiches	X: Insertion domain in tetravirus coat protein	H: Thiamin diphosphate-binding fold (THDP-binding)	T: Thiamin diphosphate-binding fold (THDP-binding)	F: TPP_enzyme_C	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
G [auth D]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
G [auth D]	2.60.270.70	Mainly Beta	Sandwich	Mutm (Fpg) Protein	Chain: A, domain 2	CATH (4.3.0)
E [auth C]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
E [auth C]	2.60.270.70	Mainly Beta	Sandwich	Mutm (Fpg) Protein	Chain: A, domain 2	CATH (4.3.0)
C [auth B]	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
C [auth B]	2.60.270.70	Mainly Beta	Sandwich	Mutm (Fpg) Protein	Chain: A, domain 2	CATH (4.3.0)
A	2.60.120.20	Mainly Beta	Sandwich	Jelly Rolls		CATH (4.3.0)
A	2.60.270.70	Mainly Beta	Sandwich	Mutm (Fpg) Protein	Chain: A, domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B [auth E], D [auth F], F [auth G], H	p70	-	-	virion component
A, C [auth B], E [auth C], G [auth D]	p70	-	-	virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth E], D [auth F], F [auth G], H	IPR029053	Viral coat protein subunit	Homologous Superfamily
B [auth E], D [auth F], F [auth G], H	IPR005313	Peptidase N2	Family
A, C [auth B], E [auth C], G [auth D]	IPR029053	Viral coat protein subunit	Homologous Superfamily
A, C [auth B], E [auth C], G [auth D]	IPR005313	Peptidase N2	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.