1OAO | pdb_00001oao

NiZn[Fe4S4] and NiNi[Fe4S4] clusters in closed and open alpha subunits of acetyl-CoA synthase/carbon monoxide dehydrogenase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1oaod_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Acetyl-CoA synthase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)
C	d1oaoc_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Acetyl-CoA synthase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)
B	d1oaob_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Carbon monoxide dehydrogenase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)
A	d1oaoa_	Multi-domain proteins (alpha and beta)	Prismane protein-like	Prismane protein-like	Carbon monoxide dehydrogenase	Bifunctional carbon monoxide dehydrogenase/acetyl-CoA synthase (CODH/ACS) beta (CODH) subunit	(Neomoorella thermoacetica ) [TaxId: 1525 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033920	3001926	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055630	3002294	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CdhC linker domain-like	8055631	3002295	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	CdhC C-terminal domain-like	8055632	3002296	SCOP2B (2022-06-29)
C	SCOP2 Family	CdhC-like	8021540	4003380	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	CdhC C-terminal domain-like	8055632	3002296	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Prismane protein cluster-binding domain-like	8033920	3001926	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Prismane protein N-terminal helical bundle-like	8055630	3002294	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	CdhC linker domain-like	8055631	3002295	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8055589	3001926	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Prismane protein N-terminal helical bundle-like	8055590	3002294	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Prismane protein cluster-binding domain-like	8033918	3001926	SCOP2B (2022-06-29)
A	SCOP2 Family	Carbon monoxide dehydrogenase	8021538	4003730	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Prismane protein cluster-binding domain-like	8055589	3001926	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Prismane protein cluster-binding domain-like	8033918	3001926	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Prismane protein N-terminal helical bundle-like	8055590	3002294	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	TFR_dimer	e1oaoD1	A: alpha bundles	X: EGF-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: TFR_dimer	ECOD (develop294)
D	CBAH	e1oaoD2	A: alpha bundles	X: EGF-like	H: LDL receptor-like module	T: LDL receptor-like module	F: CBAH	ECOD (develop294)
D	Cytochrom_CIII	e1oaoD4	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: Cytochrom_CIII	ECOD (develop294)
C	CODH_A_N	e1oaoC1	A: alpha bundles	X: Helical bundle domain in prismane-like proteins	H: Helical bundle domain in prismane-like proteins	T: Helical bundle domain in prismane-like proteins	F: CODH_A_N	ECOD (develop294)
C	CdhC	e1oaoC2	A: few secondary structure elements	X: first a+b domain in acetyl-CoA synthase	H: first a+b domain in acetyl-CoA synthase	T: first a+b domain in acetyl-CoA synthase	F: CdhC	ECOD (develop294)
C	ACS_CODH_B_C	e1oaoC3	A: few secondary structure elements	X: second a+b domain in acetyl-CoA synthase	H: second a+b domain in acetyl-CoA synthase	T: second a+b domain in acetyl-CoA synthase	F: ACS_CODH_B_C	ECOD (develop294)
C	ACS_CODH_B_C	e1oaoC4	A: few secondary structure elements	X: Fe-binding domain in prismane-like proteins	H: Fe-binding domain in prismane-like proteins	T: Fe-binding domain in prismane-like proteins	F: ACS_CODH_B_C	ECOD (develop294)
B	Prismane	e1oaoB3	A: alpha bundles	X: EF-hand	H: EF-hand-related	T: EF-hand	F: Prismane	ECOD (develop294)
A	TFR_dimer	e1oaoA1	A: alpha bundles	X: EGF-like	H: Flavivirus capsid protein C	T: Flavivirus capsid protein C	F: TFR_dimer	ECOD (develop294)
A	RecU	e1oaoA3	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: RecU	ECOD (develop294)
A	zf-MYND	e1oaoA5	A: alpha bundles	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: zf-MYND	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.10.8.190	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
D	3.40.50.2030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
D	3.30.1650.10	Alpha Beta	2-Layer Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	CATH (4.3.0)
D	3.40.970.20	Alpha Beta	3-Layer(aba) Sandwich	Ribonuclease HI	Chain A	CATH (4.3.0)
D	3.40.1470.10	Alpha Beta	3-Layer(aba) Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	CATH (4.3.0)
C	1.10.8.190	Mainly Alpha	Orthogonal Bundle	Helicase, Ruva Protein	domain 3	CATH (4.3.0)
C	3.40.50.2030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
C	3.30.1650.10	Alpha Beta	2-Layer Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 3	CATH (4.3.0)
C	3.40.970.20	Alpha Beta	3-Layer(aba) Sandwich	Ribonuclease HI	Chain A	CATH (4.3.0)
C	3.40.1470.10	Alpha Beta	3-Layer(aba) Sandwich	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase(codh/acs), Chain M, domain 5	CATH (4.3.0)
B	3.40.50.2030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
B	1.20.1270.30	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak	Chain:A	CATH (4.3.0)
A	3.40.50.2030	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
A	1.20.1270.30	Mainly Alpha	Up-down Bundle	Substrate Binding Domain Of Dnak	Chain:A	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	CARBON MONOXIDE DEHYDROGENASE/ACETYL-COA SYNTHASE SUBUNIT ALPHA	anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor oxidoreductase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity acyltransferase activity CO-methylating acetyl-CoA synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor oxidoreductase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity acyltransferase activity CO-methylating acetyl-CoA synthase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity iron-sulfur cluster binding binding 4 iron, 4 sulfur cluster binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	nucleoside phosphate metabolic process primary metabolic process acetyl-CoA metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process nucleoside phosphate metabolic process primary metabolic process acetyl-CoA metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process acyl-CoA metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process carbon fixation	-
A, B	CARBON MONOXIDE DEHYDROGENASE/ACETYL-COA SYNTHASE SUBUNIT BETA	cation binding transition metal ion binding ion binding binding nickel cation binding metal ion binding small molecule binding peroxidase activity oxidoreductase activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor catalytic activity anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor cation binding transition metal ion binding ion binding binding nickel cation binding metal ion binding small molecule binding peroxidase activity oxidoreductase activity antioxidant activity oxidoreductase activity, acting on peroxide as acceptor catalytic activity anaerobic carbon-monoxide dehydrogenase activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, iron-sulfur protein as acceptor oxidoreductase activity, acting on the aldehyde or oxo group of donors hydroxylamine reductase activity oxidoreductase activity, acting on other nitrogenous compounds as donors iron-sulfur cluster binding 4 iron, 4 sulfur cluster binding metal cluster binding	metabolic process cellular process carbon fixation generation of precursor metabolites and energy response to hydrogen peroxide response to oxidative stress response to stimulus response to stress response to chemical response to oxygen-containing compound response to reactive oxygen species	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR041350	Carbon monoxide dehydrogenase subunit alpha ,N-terminal	Domain
C, D	IPR016099	Prismane-like, alpha/beta-sandwich	Homologous Superfamily
C, D	IPR004461	CO dehydrogenase/acetyl-CoA synthase complex beta subunit	Family
C, D	IPR045822	CO dehydrogenase/acetyl-CoA synthase complex beta subunit , C-terminal	Domain
C, D	IPR038571	Bifunctional carbon monoxide dehydrogenase/acetyl-coa synthase, domain 3 superfamily	Homologous Superfamily
C, D	IPR011254	Prismane-like superfamily	Homologous Superfamily
A, B	IPR016099	Prismane-like, alpha/beta-sandwich	Homologous Superfamily
A, B	IPR004137	Hydroxylamine reductase/Ni-containing CO dehydrogenase	Family
A, B	IPR016101	CO dehydrogenase, alpha-bundle	Homologous Superfamily
A, B	IPR010047	Ni-containing CO dehydrogenase	Family
A, B	IPR011254	Prismane-like superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.