1O8C | pdb_00001o8c

CRYSTAL STRUCTURE OF E. COLI K-12 YHDH WITH BOUND NADPH

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1o8cd3	All beta proteins	GroES-like	GroES-like	Alcohol dehydrogenase-like, N-terminal domain	Hypothetical protein YhdH	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
D	d1o8cd4	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Alcohol dehydrogenase-like, C-terminal domain	Hypothetical protein YhdH	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
D	d1o8cd5	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
C	d1o8cc1	All beta proteins	GroES-like	GroES-like	Alcohol dehydrogenase-like, N-terminal domain	Hypothetical protein YhdH	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
C	d1o8cc3	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Alcohol dehydrogenase-like, C-terminal domain	Hypothetical protein YhdH	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d1o8cb3	All beta proteins	GroES-like	GroES-like	Alcohol dehydrogenase-like, N-terminal domain	Hypothetical protein YhdH	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d1o8cb4	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Alcohol dehydrogenase-like, C-terminal domain	Hypothetical protein YhdH	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
B	d1o8cb5	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
A	d1o8ca3	All beta proteins	GroES-like	GroES-like	Alcohol dehydrogenase-like, N-terminal domain	Hypothetical protein YhdH	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
A	d1o8ca4	Alpha and beta proteins (a/b)	NAD(P)-binding Rossmann-fold domains	NAD(P)-binding Rossmann-fold domains	Alcohol dehydrogenase-like, C-terminal domain	Hypothetical protein YhdH	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)
A	d1o8ca5	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Escherichia coli K-12 ) [TaxId: 83333 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Zinc-containing alcohol dehydrogenase-like	8057578	3000040	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GroES-like	8057577	3000002	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Zinc-containing alcohol dehydrogenase-like	8057578	3000040	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	GroES-like	8057577	3000002	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	GroES-like	8057577	3000002	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Zinc-containing alcohol dehydrogenase-like	8057578	3000040	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Zinc-containing alcohol dehydrogenase-like	8057578	3000040	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	GroES-like	8057577	3000002	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Cpn10	e1o8cD1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Cpn10	ECOD (v294.1)
D	Pyrid_oxidase_2	e1o8cD2	A: a/b three-layered sandwiches	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: Pyrid_oxidase_2	ECOD (v294.1)
C	Cpn10	e1o8cC1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Cpn10	ECOD (v294.1)
C	Pyrid_oxidase_2	e1o8cC2	A: a/b three-layered sandwiches	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: Pyrid_oxidase_2	ECOD (v294.1)
B	Cpn10	e1o8cB1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Cpn10	ECOD (v294.1)
B	Pyrid_oxidase_2	e1o8cB2	A: a/b three-layered sandwiches	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: Pyrid_oxidase_2	ECOD (v294.1)
A	Cpn10	e1o8cA1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Cpn10	ECOD (v294.1)
A	zf-MYND	e1o8cA2	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: zf-MYND	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.90.180.10	Alpha Beta	Alpha-Beta Complex	Quinone Oxidoreductase	Chain A, domain 1	CATH (4.3.0)
D	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	3.90.180.10	Alpha Beta	Alpha-Beta Complex	Quinone Oxidoreductase	Chain A, domain 1	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	3.90.180.10	Alpha Beta	Alpha-Beta Complex	Quinone Oxidoreductase	Chain A, domain 1	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
A	3.90.180.10	Alpha Beta	Alpha-Beta Complex	Quinone Oxidoreductase	Chain A, domain 1	CATH (4.3.0)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF00107	Zinc-binding dehydrogenase (ADH_zinc_N)	Zinc-binding dehydrogenase		Domain
A, B, C, D	PF08240	Alcohol dehydrogenase GroES-like domain (ADH_N)	Alcohol dehydrogenase GroES-like domain	This is the catalytic domain of alcohol dehydrogenases. Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure [1-2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	YHDH	oxidoreductase activity oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor acryloyl-CoA reductase (NADPH) activity oxidoreductase activity, acting on the CH-CH group of donors catalytic activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR013154	Alcohol dehydrogenase-like, N-terminal	Domain
A, B, C, D	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR051397	Zinc-containing alcohol dehydrogenase-like protein	Family
A, B, C, D	IPR011032	GroES-like superfamily	Homologous Superfamily
A, B, C, D	IPR013149	Alcohol dehydrogenase-like, C-terminal	Domain
A, B, C, D	IPR020843	Enoylreductase domain	Domain
A, B, C, D	IPR014188	Acrylyl-CoA reductase AcuI	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.