1O7J | pdb_00001o7j

Atomic resolution structure of Erwinia chrysanthemi L-asparaginase

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1o7jd_	Alpha and beta proteins (a/b)	Glutaminase/Asparaginase	Glutaminase/Asparaginase	Glutaminase/Asparaginase	Asparaginase type II	(Dickeya chrysanthemi ) [TaxId: 556 ],	SCOPe (2.08)
C	d1o7jc_	Alpha and beta proteins (a/b)	Glutaminase/Asparaginase	Glutaminase/Asparaginase	Glutaminase/Asparaginase	Asparaginase type II	(Dickeya chrysanthemi ) [TaxId: 556 ],	SCOPe (2.08)
B	d1o7jb_	Alpha and beta proteins (a/b)	Glutaminase/Asparaginase	Glutaminase/Asparaginase	Glutaminase/Asparaginase	Asparaginase type II	(Dickeya chrysanthemi ) [TaxId: 556 ],	SCOPe (2.08)
A	d1o7ja_	Alpha and beta proteins (a/b)	Glutaminase/Asparaginase	Glutaminase/Asparaginase	Glutaminase/Asparaginase	Asparaginase type II	(Dickeya chrysanthemi ) [TaxId: 556 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Glutaminase/Asparaginase	8044075	3001625	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Glutaminase/Asparaginase	8044075	3001625	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Glutaminase/Asparaginase	8044075	3001625	SCOP2B (2022-06-29)
A	SCOP2 Family	Glutaminase/Asparaginase	8031697	4000833	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Glutaminase/Asparaginase	8044075	3001625	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Glyco_hydro_32C	e1o7jD2	A: alpha bundles	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Glyco_hydro_32C	ECOD (develop294)
C	Glyco_hydro_32C	e1o7jC2	A: alpha bundles	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Glyco_hydro_32C	ECOD (develop294)
B	Glyco_hydro_32C	e1o7jB2	A: alpha bundles	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Glyco_hydro_32C	ECOD (develop294)
A	Asparaginase_C	e1o7jA3	A: alpha bundles	X: Glutaminase/Asparaginase C-terminal domain	H: Glutaminase/Asparaginase C-terminal domain	T: Glutaminase/Asparaginase C-terminal domain	F: Asparaginase_C	ECOD (develop294)
A	GlcV_C_terminal	e1o7jA2	A: alpha bundles	X: Flavodoxin-like	H: Glycosyl hydrolase domain	T: Glycosyl hydrolase domain	F: GlcV_C_terminal	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.1170	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	L-asparaginase, N-terminal domain	CATH (4.3.0)
D	3.40.50.40	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
C	3.40.50.1170	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	L-asparaginase, N-terminal domain	CATH (4.3.0)
C	3.40.50.40	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
B	3.40.50.1170	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	L-asparaginase, N-terminal domain	CATH (4.3.0)
B	3.40.50.40	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
A	3.40.50.1170	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	L-asparaginase, N-terminal domain	CATH (4.3.0)
A	3.40.50.40	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	L-ASPARAGINASE	asparaginase activity amidase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	asparagine metabolic process oxoacid metabolic process carboxylic acid metabolic process small molecule metabolic process metabolic process cellular process organic acid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR027473	L-asparaginase, C-terminal	Homologous Superfamily
A, B, C, D	IPR037152	L-asparaginase, N-terminal domain superfamily	Homologous Superfamily
A, B, C, D	IPR040919	Asparaginase/glutaminase, C-terminal	Domain
A, B, C, D	IPR027475	Asparaginase/glutaminase, active site 2	Active Site
A, B, C, D	IPR036152	Asparaginase/glutaminase-like superfamily	Homologous Superfamily
A, B, C, D	IPR027474	L-asparaginase, N-terminal	Domain
A, B, C, D	IPR004550	L-asparaginase, type II	Family
A, B, C, D	IPR020827	Asparaginase/glutaminase, active site 1	Active Site
A, B, C, D	IPR006034	Asparaginase/glutaminase-like	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.