1O75 | pdb_00001o75

Tp47, the 47-Kilodalton Lipoprotein of Treponema pallidum

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1o75b1	All beta proteins	Immunoglobulin-like beta-sandwich	Tp47 lipoprotein, middle and C-terminal domains	Tp47 lipoprotein, middle and C-terminal domains	Tp47 lipoprotein, middle and C-terminal domains	(Treponema pallidum ) [TaxId: 160 ],	SCOPe (2.08)
B	d1o75b3	All beta proteins	Tp47 lipoprotein, N-terminal domain	Tp47 lipoprotein, N-terminal domain	Tp47 lipoprotein, N-terminal domain	Tp47 lipoprotein, N-terminal domain	(Treponema pallidum ) [TaxId: 160 ],	SCOPe (2.08)
A	d1o75a1	All beta proteins	Immunoglobulin-like beta-sandwich	Tp47 lipoprotein, middle and C-terminal domains	Tp47 lipoprotein, middle and C-terminal domains	Tp47 lipoprotein, middle and C-terminal domains	(Treponema pallidum ) [TaxId: 160 ],	SCOPe (2.08)
A	d1o75a3	All beta proteins	Tp47 lipoprotein, N-terminal domain	Tp47 lipoprotein, N-terminal domain	Tp47 lipoprotein, N-terminal domain	Tp47 lipoprotein, N-terminal domain	(Treponema pallidum ) [TaxId: 160 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Tp47 lipoprotein, middle and C-terminal domains	8055361	3002066	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Tp47 lipoprotein, middle and C-terminal domains	8055547	3002066	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Tp47 lipoprotein, N-terminal domain	8044072	3001762	SCOP2B (2022-06-29)
A	SCOP2 Family	Tp47 lipoprotein, N-terminal domain	8031694	4002797	SCOP2 (2022-06-29)
A	SCOP2 Family	Tp47 lipoprotein, middle and C-terminal domains	8055360	4007560	SCOP2 (2022-06-29)
A	SCOP2 Family	Tp47 lipoprotein, middle and C-terminal domains	8055546	4007560	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Tp47 lipoprotein, N-terminal domain	8044072	3001762	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Tp47 lipoprotein, middle and C-terminal domains	8055361	3002066	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Tp47 lipoprotein, middle and C-terminal domains	8055547	3002066	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Copper-bind	e1o75B1	A: a/b three-layered sandwiches	X: Phage tail fiber protein trimerization domain	H: beta-Prism I	T: beta-Prism I	F: Copper-bind	ECOD (v294.1)
B	zf-MYND	e1o75B3	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: zf-MYND	ECOD (v294.1)
A	PBP-Tp47_c	e1o75A1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PBP-Tp47_c	ECOD (v294.1)
A		e1o75A5	A: a/b three-layered sandwiches	X: Tp47 lipoprotein N-terminal domain	H: Tp47 lipoprotein N-terminal domain second subdomain	T: Tp47 lipoprotein N-terminal domain second subdomain	F:	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.30.1490.200	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
B	2.30.30.470	Mainly Beta	Roll	SH3 type barrels.	Penicillin-binding protein Tp47, domain B	CATH (4.3.0)
B	2.60.40.1300	Mainly Beta	Sandwich	Immunoglobulin-like	Penicillin-binding protein Tp47, domain C	CATH (4.3.0)
B	2.60.40.1270	Mainly Beta	Sandwich	Immunoglobulin-like	Penicillin-binding protein Tp47, domain D	CATH (4.3.0)
A	3.30.1490.200	Alpha Beta	2-Layer Sandwich	Dna Ligase	domain 1	CATH (4.3.0)
A	2.30.30.470	Mainly Beta	Roll	SH3 type barrels.	Penicillin-binding protein Tp47, domain B	CATH (4.3.0)
A	2.60.40.1300	Mainly Beta	Sandwich	Immunoglobulin-like	Penicillin-binding protein Tp47, domain C	CATH (4.3.0)
A	2.60.40.1270	Mainly Beta	Sandwich	Immunoglobulin-like	Penicillin-binding protein Tp47, domain D	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF14888	Penicillin-binding protein Tp47 domain C (PBP-Tp47_c)	Penicillin-binding protein Tp47 domain C	Domain C is the largest domain in this unusual penicillin-binding protein PBP), Tp47. This domain is mainly characterised by an immunoglobulin fold with two opposing beta-sheets that form the typical barrel-like structure. In contrast to the classica ...	Domain C is the largest domain in this unusual penicillin-binding protein PBP), Tp47. This domain is mainly characterised by an immunoglobulin fold with two opposing beta-sheets that form the typical barrel-like structure. In contrast to the classical immunoglobulin fold, however, this has an additional beta-strand inserted after strand 3. Also, the strands are connected by rather large loops. Helices are inserted between strands 2 and 3 and between strands 4 and 5. Domain C interacts with domain B via a surface that has a slightly concave, goblet-like shape. Tp47 is unusual in that it displays beta-lactamase activity, and thus it does not fit the classical structural and mechanistic paradigms for PBPs, and thus Tp47 appears to represent a new class of PBP [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	47 KDA MEMBRANE ANTIGEN	peptidase activity catalytic activity, acting on a protein hydrolase activity catalytic activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR038698	Tp47, domain C superfamily	Homologous Superfamily
A, B	IPR029221	Penicillin-binding protein Tp47 domain A	Domain
A, B	IPR029220	Penicillin-binding protein Tp47, domain D	Homologous Superfamily
A, B	IPR029218	Penicillin-binding protein Tp47, domain C	Domain
A, B	IPR038031	Tp47 lipoprotein, middle and C-terminal domain	Homologous Superfamily
A, B	IPR036154	Tp47, N-terminal domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.