1NZY | pdb_00001nzy

4-CHLOROBENZOYL COENZYME A DEHALOGENASE FROM PSEUDOMONAS SP. STRAIN CBS-3

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Structure Motif: Primary M-CSA Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1nzyb_	Alpha and beta proteins (a/b)	ClpP/crotonase	ClpP/crotonase	Crotonase-like	4-Chlorobenzoyl-CoA dehalogenase	(Pseudomonas sp. CBS3 ) [TaxId: 72586 ],	SCOPe (2.08)
C	d1nzyc_	Alpha and beta proteins (a/b)	ClpP/crotonase	ClpP/crotonase	Crotonase-like	4-Chlorobenzoyl-CoA dehalogenase	(Pseudomonas sp. CBS3 ) [TaxId: 72586 ],	SCOPe (2.08)
A	d1nzya_	Alpha and beta proteins (a/b)	ClpP/crotonase	ClpP/crotonase	Crotonase-like	4-Chlorobenzoyl-CoA dehalogenase	(Pseudomonas sp. CBS3 ) [TaxId: 72586 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	ClpP/crotonase	8057980	3000033	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ClpP/crotonase	8057980	3000033	SCOP2B (2022-06-29)
A	SCOP2 Family	Crotonase-like	8057979	4000036	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	ClpP/crotonase	8057980	3000033	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	ECH_1	e1nzyB1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: ECH_1	ECOD (1.6)
C	ECH_1	e1nzyC1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: ECH_1	ECOD (1.6)
A	ECH_1	e1nzyA1	A: a/b three-layered sandwiches	X: ClpP/crotonase (From Topology)	H: ClpP/crotonase (From Topology)	T: ClpP/crotonase	F: ECH_1	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
B	1.10.12.10	Mainly Alpha	Orthogonal Bundle	Lyase 2-enoyl-coa Hydratase	Chain A, domain 2	CATH (4.3.0)
C	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
C	1.10.12.10	Mainly Alpha	Orthogonal Bundle	Lyase 2-enoyl-coa Hydratase	Chain A, domain 2	CATH (4.3.0)
A	3.90.226.10	Alpha Beta	Alpha-Beta Complex	2-enoyl-CoA Hydratase	Chain A, domain 1	CATH (4.3.0)
A	1.10.12.10	Mainly Alpha	Orthogonal Bundle	Lyase 2-enoyl-coa Hydratase	Chain A, domain 2	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	4-CHLOROBENZOYL COENZYME A DEHALOGENASE	4-chlorobenzoyl-CoA dehalogenase activity hydrolase activity, acting on halide bonds hydrolase activity hydrolase activity, acting on halide bonds, in C-halide compounds catalytic activity	nucleoside phosphate metabolic process primary metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process coenzyme A metabolic process	-
A, C	4-CHLOROBENZOYL COENZYME A DEHALOGENASE	4-chlorobenzoyl-CoA dehalogenase activity hydrolase activity, acting on halide bonds hydrolase activity hydrolase activity, acting on halide bonds, in C-halide compounds catalytic activity	nucleoside phosphate metabolic process primary metabolic process purine-containing compound metabolic process nucleobase-containing compound metabolic process organophosphate metabolic process nucleobase-containing small molecule metabolic process phosphate-containing compound metabolic process sulfur compound metabolic process metabolic process cellular process small molecule metabolic process phosphorus metabolic process coenzyme A metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR051053	Enoyl-CoA hydratase/isomerase and chromodomain-containing protein	Family
B	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
B	IPR001753	Enoyl-CoA hydratase/isomerase-like domain	Domain
B	IPR018376	Enoyl-CoA hydratase/isomerase, conserved site	Conserved Site
B	IPR014748	Enoyl-CoA hydratase, C-terminal	Homologous Superfamily
A, C	IPR051053	Enoyl-CoA hydratase/isomerase and chromodomain-containing protein	Family
A, C	IPR029045	ClpP/crotonase-like domain superfamily	Homologous Superfamily
A, C	IPR001753	Enoyl-CoA hydratase/isomerase-like domain	Domain
A, C	IPR018376	Enoyl-CoA hydratase/isomerase, conserved site	Conserved Site
A, C	IPR014748	Enoyl-CoA hydratase, C-terminal	Homologous Superfamily

Structure Motif Annotation: Mechanism and Catalytic Site Atlas M-CSA Database Homepage

Chains	Enzyme Name	Description	Catalytic Residues
A	4-chlorobenzoyl-CoA dehalogenase M-CSA #24	Chlorobenzoate dehalogenase catalyses the hydrolysis of chlorobenzoyl-CoA to hydroxybenzoyl-CoA. This reaction is used by bacteria as part of a three enzyme pathway for the utilisation of chlorinated organic compounds as a carbons source. The chlorobenzoate dehalogenase step is the second in the pathway and is structurally related to the crotonase-like superfamily of enzymes found in the beta-oxidation cycle. Since chlorinated organic compounds are thought to have only been present in the biosphere in significant amounts for the latter half of this century due to industrial production. The potential for bacteria to evolve new degradation pathways within decades of exposure to a new compound offers the possibility of bioremediation of environmentally hazardous and toxic substances.	Defined by 6 residues: PHE:A-64ALA:A-86HIS:A-90GLY:A-114TRP:A-137ASP:A-145 \| Explore in 3D: M-CSA Motif Definition Search M-CSA Motif EC: 3.8.1.6 (PDB Primary Data) Search M-CSA Motif + EC 3.8.1.6 EC: 3.8.1.7 (UniProt) Search M-CSA Motif + EC 3.8.1.7

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.