1NP7 | pdb_00001np7

Crystal Structure Analysis of Synechocystis sp. PCC6803 cryptochrome

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d1np7b1	All alpha proteins	Cryptochrome/photolyase FAD-binding domain	Cryptochrome/photolyase FAD-binding domain	Cryptochrome/photolyase FAD-binding domain	Cryptochrome C-terminal domain	(Synechocystis sp. PCC 6803 ) [TaxId: 1148 ],	SCOPe (2.08)
B	d1np7b2	Alpha and beta proteins (a/b)	Cryptochrome/photolyase, N-terminal domain	Cryptochrome/photolyase, N-terminal domain	Cryptochrome/photolyase, N-terminal domain	Cryptochrome	(Synechocystis sp. PCC 6803 ) [TaxId: 1148 ],	SCOPe (2.08)
A	d1np7a1	All alpha proteins	Cryptochrome/photolyase FAD-binding domain	Cryptochrome/photolyase FAD-binding domain	Cryptochrome/photolyase FAD-binding domain	Cryptochrome C-terminal domain	(Synechocystis sp. PCC 6803 ) [TaxId: 1148 ],	SCOPe (2.08)
A	d1np7a2	Alpha and beta proteins (a/b)	Cryptochrome/photolyase, N-terminal domain	Cryptochrome/photolyase, N-terminal domain	Cryptochrome/photolyase, N-terminal domain	Cryptochrome	(Synechocystis sp. PCC 6803 ) [TaxId: 1148 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Cryptochrome/photolyase FAD-binding domain	8043904	3000930	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cryptochrome/photolyase, N-terminal domain	8043905	3001644	SCOP2B (2022-06-29)
A	SCOP2 Family	Cryptochrome/photolyase FAD-binding domain	8031526	4001154	SCOP2 (2022-06-29)
A	SCOP2 Family	Cryptochrome/photolyase, N-terminal domain	8031527	4003847	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cryptochrome/photolyase FAD-binding domain	8043904	3000930	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Cryptochrome/photolyase, N-terminal domain	8043905	3001644	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Ion_trans_2	e1np7B1	A: alpha bundles	X: EGF-like	H: Rpp14/Pop5-like	T: Rpp14/Pop5-like	F: Ion_trans_2	ECOD (develop294)
B	Usp	e1np7B2	A: alpha bundles	X: HTH	H: HTH	T: winged helix domain	F: Usp	ECOD (develop294)
A	FAD_binding_7	e1np7A1	A: a+b two layers	X: Cryptochrome/photolyase FAD-binding domain-related	H: Cryptochrome/photolyase FAD-binding domain-related	T: Cryptochrome/photolyase FAD-binding domain	F: FAD_binding_7	ECOD (develop294)
A	DNA_photolyase	e1np7A2	A: alpha bundles	X: HUP domain-like	H: HUP domains	T: HUP domains	F: DNA_photolyase	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.620	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HUPs	CATH (4.3.0)
B	1.25.40.80	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
B	1.10.579.10	Mainly Alpha	Orthogonal Bundle	DNA Cyclobutane Dipyrimidine Photolyase, subunit A	domain 3	CATH (4.3.0)
A	3.40.50.620	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HUPs	CATH (4.3.0)
A	1.25.40.80	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
A	1.10.579.10	Mainly Alpha	Orthogonal Bundle	DNA Cyclobutane Dipyrimidine Photolyase, subunit A	domain 3	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF00875	DNA photolyase (DNA_photolyase)	DNA photolyase	This domain binds a light harvesting cofactor.	Domain
A, B	PF03441	FAD binding domain of DNA photolyase (FAD_binding_7)	FAD binding domain of DNA photolyase		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	DNA photolyase	DNA binding binding nucleic acid binding FAD binding flavin adenine dinucleotide binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding DNA photolyase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid DNA binding binding nucleic acid binding FAD binding flavin adenine dinucleotide binding nucleoside phosphate binding ion binding anion binding nucleotide binding heterocyclic compound binding small molecule binding DNA photolyase activity catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid lyase activity catalytic activity carbon-carbon lyase activity	cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process pyrimidine dimer repair macromolecule metabolic process photoreactive repair cellular response to stimulus response to stimulus primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process pyrimidine dimer repair macromolecule metabolic process photoreactive repair DNA repair	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR036155	Cryptochrome/photolyase, N-terminal domain superfamily	Homologous Superfamily
A, B	IPR014133	Cryptochrome DASH	Family
A, B	IPR006050	DNA photolyase, N-terminal	Domain
A, B	IPR002081	Cryptochrome/DNA photolyase class 1	Family
A, B	IPR036134	Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily	Homologous Superfamily
A, B	IPR005101	Cryptochrome/DNA photolyase, FAD-binding domain	Domain
A, B	IPR018394	Cryptochrome/DNA photolyase class 1, conserved site, C-terminal	Conserved Site
A, B	IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.