Structure of the Large Protease Resistant Upper Domain of VP5, the Major Capsid Protein of Herpes Simplex Virus-1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | d1no7a_ | Multi-domain proteins (alpha and beta) | Major capsid protein VP5 | Major capsid protein VP5 | Major capsid protein VP5 | Major capsid protein VP5 | Herpes simplex virus type 1 (Human alphaherpesvirus 1 ) [TaxId: 10298 ], | SCOPe (2.08) |
| B | d1no7b_ | Multi-domain proteins (alpha and beta) | Major capsid protein VP5 | Major capsid protein VP5 | Major capsid protein VP5 | Major capsid protein VP5 | Herpes simplex virus type 1 (Human alphaherpesvirus 1 ) [TaxId: 10298 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| A | SCOP2 Family | Major capsid protein VP5 | 8024486 | 4001666 | SCOP2 (2022-06-29) |
| A | SCOP2 Superfamily | Herpes simplex virus MCP-like | 8036865 | 3000230 | SCOP2 (2022-06-29) |
| B | SCOP2B Superfamily | Herpes simplex virus MCP-like | 8036865 | 3000230 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | Herpes_MCP | e1no7A1 | A: few secondary structure elements | X: Major capsid protein VP5 | H: Major capsid protein VP5 | T: Major capsid protein VP5 | F: Herpes_MCP | ECOD (v294.1) |
| B | TaqI_C | e1no7B1 | A: a/b three-layered sandwiches | X: ETN0001 domain-like | H: ETN0001 domain-like | T: Mss4-like | F: TaqI_C | ECOD (v294.1) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| Major capsid protein | - |
|
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR000912 | Herpesvirus major capsid protein | Family | |
| IPR023233 | Herpesvirus major capsid protein, upper domain superfamily | Homologous Superfamily |
