1NO4 | pdb_00001no4

Crystal Structure of the pre-assembly scaffolding protein gp7 from the double-stranded DNA bacteriophage phi29

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d1no4d_	Coiled coil proteins	Parallel coiled-coil	Head morphogenesis protein gp7	Head morphogenesis protein gp7	Head morphogenesis protein gp7	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
C	d1no4c_	Coiled coil proteins	Parallel coiled-coil	Head morphogenesis protein gp7	Head morphogenesis protein gp7	Head morphogenesis protein gp7	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
B	d1no4b_	Coiled coil proteins	Parallel coiled-coil	Head morphogenesis protein gp7	Head morphogenesis protein gp7	Head morphogenesis protein gp7	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)
A	d1no4a_	Coiled coil proteins	Parallel coiled-coil	Head morphogenesis protein gp7	Head morphogenesis protein gp7	Head morphogenesis protein gp7	(Salasvirus phi29 ) [TaxId: 10756 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Head morphogenesis protein gp7	8033491	3001776	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Head morphogenesis protein gp7	8033491	3001776	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Head morphogenesis protein gp7	8033491	3001776	SCOP2B (2022-06-29)
A	SCOP2 Family	Head morphogenesis protein gp7	8021111	4003909	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Head morphogenesis protein gp7	8033491	3001776	SCOP2 (2022-06-29)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	1.20.5.400	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
C	1.20.5.400	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
B	1.20.5.400	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
A	1.20.5.400	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF11418	Phi29 scaffolding protein (Scaffolding_pro)	Phi29 scaffolding protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	HEAD MORPHOGENESIS PROTEIN	DNA binding binding nucleic acid binding	virion assembly viral process viral life cycle	protein-containing complex viral capsid virion component viral scaffold

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR038032	Capsid assembly scaffolding protein Gp7	Homologous Superfamily
A, B, C, D	IPR024374	Bacteriophage phi-29 scaffolding protein Gp7	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.