1NJG
Nucleotide-free form of an Isolated E. coli Clamp Loader Gamma Subunit
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | d1njga_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | Extended AAA-ATPase domain | delta prime subunit of DNA polymerase III, N-domain | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
B | d1njgb_ | Alpha and beta proteins (a/b) | P-loop containing nucleoside triphosphate hydrolases | P-loop containing nucleoside triphosphate hydrolases | Extended AAA-ATPase domain | delta prime subunit of DNA polymerase III, N-domain | (Escherichia coli ) [TaxId: 562 ], | SCOPe (2.08) |
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | RecA-like P-loop NTPases | 8034548 | 3002019 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104152 | 3002834 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | DNA polymerases epsilon N-terminal domain (Dpoe2NT)-like | 8104152 | 3002834 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | RecA-like P-loop NTPases | 8034548 | 3002019 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
A | PF22608 | e1njgA4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF22608 | ECOD (1.6) |
A | PF13177 | e1njgA1 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13177 | ECOD (1.6) |
A | F_UNCLASSIFIED | e1njgA2 | A: few secondary structure elements | X: Zn-binding domain in DNA polymerase III subunits (From Topology) | H: Zn-binding domain in DNA polymerase III subunits (From Topology) | T: Zn-binding domain in DNA polymerase III subunits | F: F_UNCLASSIFIED | ECOD (1.6) |
B | PF22608 | e1njgB4 | A: alpha arrays | X: Histone-like | H: Histone-related | T: AAA+ ATPase lid domain | F: PF22608 | ECOD (1.6) |
B | PF13177 | e1njgB3 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF13177 | ECOD (1.6) |
B | F_UNCLASSIFIED | e1njgB2 | A: few secondary structure elements | X: Zn-binding domain in DNA polymerase III subunits (From Topology) | H: Zn-binding domain in DNA polymerase III subunits (From Topology) | T: Zn-binding domain in DNA polymerase III subunits | F: F_UNCLASSIFIED | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
---|---|---|---|---|---|---|
A | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
A | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
B | 1.10.8.60 | Mainly Alpha | Orthogonal Bundle | Helicase, Ruva Protein | domain 3 | CATH (4.3.0) |
B | 3.40.50.300 | Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases | CATH (4.3.0) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF12169 | DNA polymerase III subunits gamma and tau domain III (DNA_pol3_gamma3) | DNA polymerase III subunits gamma and tau domain III | - | Family | |
PF13177 | DNA polymerase III, delta subunit (DNA_pol3_delta2) | DNA polymerase III, delta subunit | DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction [1]. The delta subunit is also known as ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR001270 | ClpA/B family | Family | |
IPR021029 | DNA polymerase III, tau subunit, domain V | Domain | |
IPR008921 | DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal | Homologous Superfamily | |
IPR022754 | DNA polymerase III, gamma subunit, domain III | Domain | |
IPR012763 | DNA polymerase III, subunit gamma/ tau, N-terminal | Domain | |
IPR038249 | DNA polymerase III, tau subunit, domain V superfamily | Homologous Superfamily | |
IPR003593 | AAA+ ATPase domain | Domain | |
IPR022001 | DNA polymerase III subunit tau, DnaB-binding domain IV | Domain | |
IPR045085 | DNA polymerase III, subunit gamma/tau, helical lid domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |