1MW5 | pdb_00001mw5

Structure of HI1480 from Haemophilus influenzae


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2 FamilyHypothetical protein HI1480 8024173 4001589 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyHypothetical protein HI1480 8036552 3001912 SCOP2 (2022-06-29)
BSCOP2B SuperfamilyHypothetical protein HI1480 8036552 3001912 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AEUF08570e1mw5A1 A: a+b complex topologyX: Hypothetical protein HI1480 (From Topology)H: Hypothetical protein HI1480 (From Topology)T: Hypothetical protein HI1480F: EUF08570ECOD (1.6)
BEUF08570e1mw5B1 A: a+b complex topologyX: Hypothetical protein HI1480 (From Topology)H: Hypothetical protein HI1480 (From Topology)T: Hypothetical protein HI1480F: EUF08570ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A1.20.272.30 Mainly Alpha Up-down Bundle Zinc Finger, Delta Prime domain 3CATH (4.2.0)
B1.20.272.30 Mainly Alpha Up-down Bundle Zinc Finger, Delta Prime domain 3CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF22186Hypothetical protein HI1480 (HI1480)Hypothetical protein HI1480This entry represents the HI1480 protein from Haemophilus influenzae an apparent ORFan protein [1]. The protein HI1480 from Haemophilus influenzae has been structurally characterized. It exhibits a unique amino acid sequence, lacking homology with kn ...This entry represents the HI1480 protein from Haemophilus influenzae an apparent ORFan protein [1]. The protein HI1480 from Haemophilus influenzae has been structurally characterized. It exhibits a unique amino acid sequence, lacking homology with known proteins. HI1480 adopts a novel alpha+beta fold and forms dimers of tightly associated dimers. The dimerization is facilitated by intermolecular interactions mediated by an antiparallel beta-barrel involving both monomers, while tetramer formation is mediated by helical regions of the dimers. Notably, the helical region contains a four-helix bundle reminiscent of anticodon binding domains found in class I tRNA synthetases, suggesting a potential active centre or catalytic site. Gel mobility shift assays demonstrate HI1480's ability to bind both DNA and RNA molecules, with a preference for double-stranded DNA over single-stranded DNA and higher affinity for longer DNA fragments.
Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR037180Hypothetical protein HI1480Homologous Superfamily